Xiaochen Feng, Hao Sha, Yongbing Zhang, Yaoquan Su, Shuai Liu, Yuan Jiang, Shangguo Hou, Sanyang Han, Xiangyang Ji
{"title":"Reliable deep learning in anomalous diffusion against out-of-distribution dynamics","authors":"Xiaochen Feng, Hao Sha, Yongbing Zhang, Yaoquan Su, Shuai Liu, Yuan Jiang, Shangguo Hou, Sanyang Han, Xiangyang Ji","doi":"10.1038/s43588-024-00703-7","DOIUrl":null,"url":null,"abstract":"Anomalous diffusion plays a crucial rule in understanding molecular-level dynamics by offering valuable insights into molecular interactions, mobility states and the physical properties of systems across both biological and materials sciences. Deep-learning techniques have recently outperformed conventional statistical methods in anomalous diffusion recognition. However, deep-learning networks are typically trained by data with limited distribution, which inevitably fail to recognize unknown diffusion models and misinterpret dynamics when confronted with out-of-distribution (OOD) scenarios. In this work, we present a general framework for evaluating deep-learning-based OOD dynamics-detection methods. We further develop a baseline approach that achieves robust OOD dynamics detection as well as accurate recognition of in-distribution anomalous diffusion. We demonstrate that this method enables a reliable characterization of complex behaviors across a wide range of experimentally diverse systems, including nicotinic acetylcholine receptors in membranes, fluorescent beads in dextran solutions and silver nanoparticles undergoing active endocytosis. This work introduces a framework that enhances deep learning for anomalous diffusion, enabling reliable detection of out-of-distribution dynamics and characterization of complex behaviors across diverse systems.","PeriodicalId":74246,"journal":{"name":"Nature computational science","volume":"4 10","pages":"761-772"},"PeriodicalIF":12.0000,"publicationDate":"2024-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature computational science","FirstCategoryId":"1085","ListUrlMain":"https://www.nature.com/articles/s43588-024-00703-7","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Anomalous diffusion plays a crucial rule in understanding molecular-level dynamics by offering valuable insights into molecular interactions, mobility states and the physical properties of systems across both biological and materials sciences. Deep-learning techniques have recently outperformed conventional statistical methods in anomalous diffusion recognition. However, deep-learning networks are typically trained by data with limited distribution, which inevitably fail to recognize unknown diffusion models and misinterpret dynamics when confronted with out-of-distribution (OOD) scenarios. In this work, we present a general framework for evaluating deep-learning-based OOD dynamics-detection methods. We further develop a baseline approach that achieves robust OOD dynamics detection as well as accurate recognition of in-distribution anomalous diffusion. We demonstrate that this method enables a reliable characterization of complex behaviors across a wide range of experimentally diverse systems, including nicotinic acetylcholine receptors in membranes, fluorescent beads in dextran solutions and silver nanoparticles undergoing active endocytosis. This work introduces a framework that enhances deep learning for anomalous diffusion, enabling reliable detection of out-of-distribution dynamics and characterization of complex behaviors across diverse systems.