Coevolutionary Analysis of the Pfs47-P47Rec Complex: A Bioinformatics Approach.

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS
Bioinformatics and Biology Insights Pub Date : 2024-10-08 eCollection Date: 2024-01-01 DOI:10.1177/11779322241284223
Andrés S Ortiz-Morazán, Marcela María Moncada, Denis Escobar, Leonardo A Cabrera-Moreno, Gustavo Fontecha
{"title":"Coevolutionary Analysis of the Pfs47-P47Rec Complex: A Bioinformatics Approach.","authors":"Andrés S Ortiz-Morazán, Marcela María Moncada, Denis Escobar, Leonardo A Cabrera-Moreno, Gustavo Fontecha","doi":"10.1177/11779322241284223","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The ability to predict and comprehend molecular interactions offers significant insights into the biological functions of proteins. The interaction between surface protein 47 of <i>Plasmodium falciparum</i> (Pfs47) and receptor of the protein 47 (P47Rec) has attracted increased attention due to their role in parasite evasion of the mosquito immune system and the concept of geographical coevolution between species. The aims of this study were as follows: to apply a bioinformatics approach to investigate the interaction between Pfs47 and P47Rec proteins and to identify the potential binding sites, protein orientations and receptor specificity sites concerning the geographical origins of the vectors and the parasite.</p><p><strong>Methods: </strong>Public sequences of the <i>pfs47</i> and <i>p47rec</i> genes were downloaded and subsequently filtered to predict functional and structural annotations of the Pfs47-P47Rec complex. Phylogenetic analyses of both proteins were carried out. In addition, the p47Rec gene was subjected to sequencing and subsequent analysis in 2 distinct <i>Anopheles</i> species collected in Honduras.</p><p><strong>Results: </strong>The examination of motifs reveals a significant degree of conservation in <i>pfs47</i>, suggesting that Pfs47 might have undergone recent evolutionary development and adaptation. Structural models and docking analyses supported the theory of selectivity of <i>Plasmodium falciparum</i> strains towards their vectors in diverse geographical regions. A detailed description of the putative interaction between the Pfs47-P47Rec complex is shown.</p><p><strong>Conclusions: </strong>The study identifies coevolutionary patterns between P47Rec and Pfs47 related to the speciation and geographic dispersion of <i>Anopheles</i> species and <i>Plasmodium falciparum</i>, with Pfs47 evolving more recently than P47Rec. This suggests a link between the parasite's adaptability and existing anopheline species across different regions. P47Rec likely has a cytoplasmic localization due to its lack of membrane attachment elements. However, these findings are based on simulations and require validation through methods like cryo-electron microscopy. A significant limitation is the scarcity of sequences in global databases, which restricts precise interaction modelling. Further research with diverse parasite isolates and anopheline species is recommended to enhance understanding of these proteins' structure and interaction.</p>","PeriodicalId":9065,"journal":{"name":"Bioinformatics and Biology Insights","volume":"18 ","pages":"11779322241284223"},"PeriodicalIF":2.3000,"publicationDate":"2024-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11462556/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioinformatics and Biology Insights","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1177/11779322241284223","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

Background: The ability to predict and comprehend molecular interactions offers significant insights into the biological functions of proteins. The interaction between surface protein 47 of Plasmodium falciparum (Pfs47) and receptor of the protein 47 (P47Rec) has attracted increased attention due to their role in parasite evasion of the mosquito immune system and the concept of geographical coevolution between species. The aims of this study were as follows: to apply a bioinformatics approach to investigate the interaction between Pfs47 and P47Rec proteins and to identify the potential binding sites, protein orientations and receptor specificity sites concerning the geographical origins of the vectors and the parasite.

Methods: Public sequences of the pfs47 and p47rec genes were downloaded and subsequently filtered to predict functional and structural annotations of the Pfs47-P47Rec complex. Phylogenetic analyses of both proteins were carried out. In addition, the p47Rec gene was subjected to sequencing and subsequent analysis in 2 distinct Anopheles species collected in Honduras.

Results: The examination of motifs reveals a significant degree of conservation in pfs47, suggesting that Pfs47 might have undergone recent evolutionary development and adaptation. Structural models and docking analyses supported the theory of selectivity of Plasmodium falciparum strains towards their vectors in diverse geographical regions. A detailed description of the putative interaction between the Pfs47-P47Rec complex is shown.

Conclusions: The study identifies coevolutionary patterns between P47Rec and Pfs47 related to the speciation and geographic dispersion of Anopheles species and Plasmodium falciparum, with Pfs47 evolving more recently than P47Rec. This suggests a link between the parasite's adaptability and existing anopheline species across different regions. P47Rec likely has a cytoplasmic localization due to its lack of membrane attachment elements. However, these findings are based on simulations and require validation through methods like cryo-electron microscopy. A significant limitation is the scarcity of sequences in global databases, which restricts precise interaction modelling. Further research with diverse parasite isolates and anopheline species is recommended to enhance understanding of these proteins' structure and interaction.

Pfs47-P47Rec 复合物的协同进化分析:生物信息学方法
背景:预测和理解分子相互作用的能力有助于深入了解蛋白质的生物学功能。由于恶性疟原虫表面蛋白 47(Pfs47)和蛋白 47 受体(P47Rec)在寄生虫逃避蚊子免疫系统中的作用以及物种间地理共同进化的概念,它们之间的相互作用引起了越来越多的关注。本研究的目的如下:应用生物信息学方法研究 Pfs47 和 P47Rec 蛋白之间的相互作用,并确定与病媒和寄生虫的地理起源有关的潜在结合位点、蛋白质方向和受体特异性位点:方法:下载 pfs47 和 p47rec 基因的公开序列,然后进行筛选,以预测 Pfs47-P47Rec 复合物的功能和结构注释。对这两种蛋白质进行了系统发育分析。此外,还对 p47Rec 基因进行了测序,并随后在洪都拉斯采集的两个不同的按蚊物种中进行了分析:结果:对图案的研究表明,pfs47 的图案有很大程度的保留,这表明 Pfs47 可能经历了近期的进化发展和适应。结构模型和对接分析支持了恶性疟原虫菌株在不同地理区域对其载体的选择性理论。研究还详细描述了 Pfs47-P47Rec 复合物之间的推定相互作用:该研究确定了 P47Rec 和 Pfs47 之间与按蚊物种和恶性疟原虫的物种演化和地理分布有关的共同进化模式,其中 Pfs47 比 P47Rec 演化得更晚。这表明寄生虫的适应性与不同地区现有的按蚊物种之间存在联系。P47Rec 由于缺乏膜附着元件,可能具有细胞质定位功能。不过,这些发现都是基于模拟,需要通过低温电子显微镜等方法进行验证。一个重要的局限性是全球数据库中的序列很少,这限制了精确的相互作用建模。建议对不同的寄生虫分离物和按蚊物种开展进一步研究,以加深对这些蛋白质结构和相互作用的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信