Genome report: Genome sequence of tuliptree scale, Toumeyella liriodendri (Gmelin), an ornamental pest insect.

IF 2.1 3区 生物学 Q3 GENETICS & HEREDITY
Andrew J Mongue, Amanda Markee, Ethan Grebler, Tracy Liesenfelt, Erin C Powell
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Abstract

Scale insects are of interest both to basic researchers for their unique reproductive biology and to applied researchers for their pest status. In spite of this interest, there remain few genomic resources for this group of insects. To begin addressing this lack of data, we present the genome sequence of tuliptree scale, Toumeyella liriodendri (Gmelin) (Hemiptera: Coccomorpha: Coccidae). The genome assembly spans 536Mb, with over 96% of sequence assembled into one of 17 chromosomal scaffolds. We characterize roughly 66% of this sequence as repetitive and annotate 16,508 protein coding genes. Then we use the reference genome to explore the phylogeny of soft scales (Coccidae) and evolution of karyotype within the family. We find that T. liriodendri is an early-diverging soft scale, less closely related to most sequenced soft scales than a species of the family Aclerdidae is. This molecular result corroborates a previous, morphology-based phylogenetic placement of Aclerdidae within Coccidae. In terms of genome structure, T. liriodendri has nearly twice as many chromosomes as the only other soft scale assembled to the chromosome level, Ericerus pela (Chavannes). In comparing the two, we find that chromosome number evolution can largely be explained by simple fissions rather than more complex rearrangements. These genomic natural history observations lay a foundation for further exploration of this unique group of insects.

基因组报告:观赏害虫楸鳞 Toumeyella liriodendri (Gmelin) 的基因组序列。
鳞翅目昆虫因其独特的繁殖生物学特性而备受基础研究人员的关注,也因其害虫地位而备受应用研究人员的关注。尽管人们对鳞翅目昆虫很感兴趣,但这类昆虫的基因组资源仍然很少。为了着手解决这一数据匮乏的问题,我们公布了鹅掌楸鳞翅目 Toumeyella liriodendri (Gmelin) (半翅目:鳞翅目:球虫科)的基因组序列。该基因组的组装跨度为 536Mb,超过 96% 的序列组装到了 17 个染色体支架中的一个。我们将其中大约 66% 的序列描述为重复序列,并注释了 16,508 个蛋白质编码基因。然后,我们利用参考基因组探讨了软鳞虫(球鳞虫科)的系统发育和科内核型的进化。我们发现,T. liriodendri 是一种早期分化的软鳞虫,与大多数已测序软鳞虫的亲缘关系不如 Aclerdidae 科的一个物种密切。这一分子结果证实了之前基于形态学的系统进化论将 Aclerdidae 放在球鳞鳞甲科内的观点。在基因组结构方面,T. liriodendri 的染色体数量几乎是唯一一种染色体水平组装的软鳞蜥 Ericerus pela (Chavannes) 的两倍。通过对两者进行比较,我们发现染色体数目的演变在很大程度上可以用简单的裂变而不是更复杂的重排来解释。这些基因组自然史观察结果为进一步探索这一独特的昆虫类群奠定了基础。
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来源期刊
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics GENETICS & HEREDITY-
CiteScore
5.10
自引率
3.80%
发文量
305
审稿时长
3-8 weeks
期刊介绍: G3: Genes, Genomes, Genetics provides a forum for the publication of high‐quality foundational research, particularly research that generates useful genetic and genomic information such as genome maps, single gene studies, genome‐wide association and QTL studies, as well as genome reports, mutant screens, and advances in methods and technology. The Editorial Board of G3 believes that rapid dissemination of these data is the necessary foundation for analysis that leads to mechanistic insights. G3, published by the Genetics Society of America, meets the critical and growing need of the genetics community for rapid review and publication of important results in all areas of genetics. G3 offers the opportunity to publish the puzzling finding or to present unpublished results that may not have been submitted for review and publication due to a perceived lack of a potential high-impact finding. G3 has earned the DOAJ Seal, which is a mark of certification for open access journals, awarded by DOAJ to journals that achieve a high level of openness, adhere to Best Practice and high publishing standards.
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