{"title":"Oxoanion complexation of nitroisophthalamide receptors: Insights from the DFT calculations","authors":"Thanawat Somtua , Wandee Rakrai , Chanukorn Tabtimsai , Banchob Wanno","doi":"10.1016/j.jmgm.2024.108870","DOIUrl":null,"url":null,"abstract":"<div><div>Amide derivative receptors have been designed to investigate the oxoanion complexation ability via hydrogen and halogen bond interactions. Structural, energetic and electronic properties of nitroisophthalamide receptors, i.e., di(benzyl)− (<strong>R1</strong>), di(hexafluoro)− (<strong>R2</strong>), di(chloro−,tetrafluoro)− (<strong>R3</strong>), di(hexachloro)−(<strong>R4</strong>), di(fluoro−,tetrachloro)−nitroisophthalamide (<strong>R5</strong>), and their complexes with C<sub>2</sub>H<sub>3</sub>O<sub>2</sub><sup>−</sup>, C<sub>7</sub>H<sub>5</sub>O<sub>2</sub><sup>−</sup>, NO<sub>3</sub><sup>−</sup>, H<sub>2</sub>PO<sub>4</sub><sup>−</sup>, and ClO<sub>4</sub><sup>−</sup> oxoanions were computed and obtained using the density functional theory calculations at the B3LYP/6-31G(d,p) theoretical level in gas phase. According to the computed results, all of oxoanions can form the stable complexes with amide receptors <strong>R1</strong>−<strong>R5</strong> via exothermic process in which receptor <strong>R1</strong> is found to interact with oxoanions through hydrogen bonds whereas the receptors <strong>R2</strong>−<strong>R5</strong> are found to interact with oxoanion through both of hydrogen and halogen bonds. It is clearly seen that acetate ion displays the strongest complexation interaction with all receptors compared to the other oxoanions. In addition, electronic properties of receptors <strong>R1</strong>−<strong>R5</strong> in both gas and DMSO phases are modified after complexation with oxoanions. Therefore, the designed amide receptors may be potentially used for oxoanion sensing application.</div></div>","PeriodicalId":16361,"journal":{"name":"Journal of molecular graphics & modelling","volume":"133 ","pages":"Article 108870"},"PeriodicalIF":2.7000,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of molecular graphics & modelling","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1093326324001700","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Amide derivative receptors have been designed to investigate the oxoanion complexation ability via hydrogen and halogen bond interactions. Structural, energetic and electronic properties of nitroisophthalamide receptors, i.e., di(benzyl)− (R1), di(hexafluoro)− (R2), di(chloro−,tetrafluoro)− (R3), di(hexachloro)−(R4), di(fluoro−,tetrachloro)−nitroisophthalamide (R5), and their complexes with C2H3O2−, C7H5O2−, NO3−, H2PO4−, and ClO4− oxoanions were computed and obtained using the density functional theory calculations at the B3LYP/6-31G(d,p) theoretical level in gas phase. According to the computed results, all of oxoanions can form the stable complexes with amide receptors R1−R5 via exothermic process in which receptor R1 is found to interact with oxoanions through hydrogen bonds whereas the receptors R2−R5 are found to interact with oxoanion through both of hydrogen and halogen bonds. It is clearly seen that acetate ion displays the strongest complexation interaction with all receptors compared to the other oxoanions. In addition, electronic properties of receptors R1−R5 in both gas and DMSO phases are modified after complexation with oxoanions. Therefore, the designed amide receptors may be potentially used for oxoanion sensing application.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.