A hybrid PCA acceleration method for rapid real-time 2D MRI.

IF 3.3 3区 医学 Q2 ENGINEERING, BIOMEDICAL
Mark Wright, Gawon Han, Jihyun Yun, Eugene Yip, Zsolt Gabos, Nawaid Usmani, B Gino Fallone, Keith Wachowicz
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Abstract

Objective.To develop a 2D MR acceleration method utilizing principal component analysis (PCA) in a hybrid fashion for rapid real-time applications.Approach.Retrospective testing was performed on 10 lung, 10 liver and 10 prostate 3T MRI data sets for image quality and target contourability. Sampling of k-space is performed by acquiring central (low-frequency) data in every frame while the high-frequency data is incoherently undersampled such that all of k-space is acquired in a pre-determined number of frames. Firstly, principal components (PCs) representative of intra-frame correlations between central and outer k-space data are used to estimate unsampled data in the frame of interest. Then to add further stability, PCs representative of time-domain fluctuations within a reconstruction window of the most recent frames are fit to outer k-space data (including above estimations) to obtain final estimates in the frame of interest. Accelerated reconstructions between 3x and 8x were tested for image quality and contourability along with the optimal number of PCs for fitting.Main results.It was found that at higher acceleration rates, image quality did not deteriorate significantly. Similarly, it was found that the images were of sufficient quality to contour a target using auto-contouring software at all tested acceleration rates and sites. SSIM values were found to be ⩾0.91 at all accelerations tested. Similarly dice coefficients at the different sites were found to be ⩾0.89 even at 8x accelerations which is on par with or better than intra-observer variation.Significance.This method appears to produce improved image quality and contourability compared to previous PCA methods while also allowing a greater number of PCs to be used in reconstruction. The method can be run using a simple single-channel coil and does not require significant computing power to meet real-time interventional standards (reconstruction times ∼60 ms/frame on Intel i5 CPU).

用于快速实时二维磁共振成像的混合 PCA 加速方法。
目标:以混合方式开发一种利用主成分分析(PCA)的二维磁共振加速方法,用于快速实时应用:对 10 个肺部、10 个肝部和 10 个前列腺 3T 磁共振成像数据集进行回顾性测试,以检测图像质量和目标可视性。对 k 空间进行采样时,在每一帧中获取中心(低频)数据,同时对高频数据进行不连贯的欠采样,从而在预先确定的帧数中获取所有 k 空间。首先,使用代表中央和外部 k 空间数据帧内相关性的主成分(PC)来估计相关帧中的未采样数据。然后,为了进一步增加稳定性,将代表最近帧重建窗口内时域波动的 PC 与外部 k 空间数据(包括上述估计值)进行拟合,以获得相关帧的最终估计值。对 3 倍和 8 倍之间的加速重建进行了图像质量和可比性测试,同时测试了拟合 PC 的最佳数量:结果发现,在较高的加速度下,图像质量并没有明显下降。同样,在所有测试的加速度和地点,图像质量都足以使用自动轮廓软件绘制目标轮廓。在所有测试的加速度下,SSIM 值均≥ 0.91。同样,即使在 8 倍加速度下,不同地点的骰子系数也≥ 0.89,与观察者内部差异相当或更好:与以前的 PCA 方法相比,这种方法似乎能提高图像质量和轮廓度,同时还能在重建过程中使用更多 PC。该方法可使用简单的单通道线圈运行,不需要强大的计算能力就能达到实时介入标准(在英特尔 i5 CPU 上重建时间约为 50 毫秒/帧)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Physics in medicine and biology
Physics in medicine and biology 医学-工程:生物医学
CiteScore
6.50
自引率
14.30%
发文量
409
审稿时长
2 months
期刊介绍: The development and application of theoretical, computational and experimental physics to medicine, physiology and biology. Topics covered are: therapy physics (including ionizing and non-ionizing radiation); biomedical imaging (e.g. x-ray, magnetic resonance, ultrasound, optical and nuclear imaging); image-guided interventions; image reconstruction and analysis (including kinetic modelling); artificial intelligence in biomedical physics and analysis; nanoparticles in imaging and therapy; radiobiology; radiation protection and patient dose monitoring; radiation dosimetry
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