Genome assembly of Firmina major, an endangered savanna tree species endemic to China

Jing Yang, Rengang Zhang, Yongpeng Ma, Yuqian Ma, Weibang Sun
{"title":"Genome assembly of Firmina major, an endangered savanna tree species endemic to China","authors":"Jing Yang, Rengang Zhang, Yongpeng Ma, Yuqian Ma, Weibang Sun","doi":"10.1101/2024.09.09.610897","DOIUrl":null,"url":null,"abstract":"The tree species Firmiana major was once dominant in the savanna vegetation of the arid hot valleys of southwest China, but was considered extinct in the wild in 1998. After eight small populations were relocated by thorough investigations between 2018 and 2020, the species was subsequently recognized as a Plant Species of Extremely Small Populations (PSESP) in China in need of urgent rescue. Moreover, due to severe human disturbance, other species in the tropical woody genus Firmiana are also endangered, and the species in this genus have almost all been listed as second-class National Protected Wild Plants in China. In order to guide future research into the conservation of this group, we present here the high-quality genome assembly of F. major. This is the first genome assembly in the genus Firmiana, and is 1.4 Gb in size. The assembly consists of 1.18 Gb repetitive sequences, 37,673 annotated genes and 31,965 coding genes.","PeriodicalId":501161,"journal":{"name":"bioRxiv - Genomics","volume":"85 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv - Genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.09.09.610897","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

The tree species Firmiana major was once dominant in the savanna vegetation of the arid hot valleys of southwest China, but was considered extinct in the wild in 1998. After eight small populations were relocated by thorough investigations between 2018 and 2020, the species was subsequently recognized as a Plant Species of Extremely Small Populations (PSESP) in China in need of urgent rescue. Moreover, due to severe human disturbance, other species in the tropical woody genus Firmiana are also endangered, and the species in this genus have almost all been listed as second-class National Protected Wild Plants in China. In order to guide future research into the conservation of this group, we present here the high-quality genome assembly of F. major. This is the first genome assembly in the genus Firmiana, and is 1.4 Gb in size. The assembly consists of 1.18 Gb repetitive sequences, 37,673 annotated genes and 31,965 coding genes.
中国特有的濒危稀树草原树种 Firmina major 的基因组组装
大叶女贞曾是中国西南干旱热谷热带草原植被中的优势树种,但在1998年被认为野外灭绝。2018 年至 2020 年间,经过深入调查,8 个小种群被重新定位,随后该物种被认定为中国急需拯救的极小种群植物物种(PSESP)。此外,由于人类的严重干扰,热带木本杉属的其他物种也濒临灭绝,该属物种几乎全部被列为中国国家二级保护野生植物。为了指导今后对这一群体的保护研究,我们在此展示了大叶杉属(F. major)的高质量基因组组装。这是大枞属的首个基因组,大小为 1.4 Gb。该基因组包括 1.18 Gb 的重复序列、37,673 个注释基因和 31,965 个编码基因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信