Hydrogen bonding in 2,2,2-trifluoroethanol

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Soon Ng, Yaoming Xie, Henry F. Schaefer III
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Abstract

Context

2,2,2-Trifluoroethanol (TFE) is known as a membrane mimetic solvent. The IR spectrum, 1H NMR spectrum, 13C NMR spin‒lattice relaxation times (T1), and nuclear Overhauser effect (NOE) data are consistent with extensive hydrogen bonding in TFE, but do not lead to structural features of the hydrogen bonding. Hence, DFT computations were carried out. The results predict the existence of a set of H-bonded dimers and trimers. The bond lengths and dihedral angles in these complexes are obtained, together with their dissociation energies. Computations were also performed for the geometry of the two conformers of the isolated monomer. The structure of one of the dimers consists of a 7-member cyclic fragment with a free CF3CH2 side chain. One set of the trimer structures involves the OH of a third monomer H-bonding to one of the F atoms in the CF3 group of the side chain of this dimer, thereby creating three trimer isomers. A fourth trimer cluster is formed from three monomers in which three OH∙∙∙O bonds create a cyclic fragment with three CF3CH2 side chains. The high dissociation energy (with respect to three monomers) indicates the high stability of the trimer complexes. The structural features of the trimer complexes resemble the structure of a conventional liquid crystal molecule and are postulated to resemble the latter in properties and function in solution, but at a much shorter timescale because of the noncovalent bonding. This hydrogen bonding phenomenon of TFE may be related to its function as a membrane memetic solvent.

Methods

Initially, IR and NMR spectroscopic methods were used. Standard procedures were followed. For the computations, a hybrid DFT method with empirical dispersion, ωB97X-D, was used. The basis set, 6-311++G**, is of triple-ζ quality, in which polarization functions and diffuse functions were added for all atoms.

Abstract Image

Abstract Image

2,2,2-三氟乙醇中的氢键
背景2,2,2-三氟乙醇(TFE)是一种已知的膜模拟溶剂。红外光谱、1H NMR 光谱、13C NMR 自旋晶格弛豫时间(T1)和核欧豪瑟效应(NOE)数据都表明 TFE 中存在广泛的氢键,但并没有得出氢键的结构特征。因此,我们进行了 DFT 计算。结果预测存在一组氢键二聚体和三聚体。结果得到了这些复合物的键长和二面角,以及它们的解离能。此外,还对孤立单体的两种构象的几何结构进行了计算。其中一个二聚体的结构由一个带有自由 CF3CH2 侧链的 7 元环状片段组成。其中一组三聚体结构涉及第三个单体的 OH 与该二聚体侧链 CF3 基团中的一个 F 原子发生 H 键连接,从而形成三个三聚体异构体。第四个三聚体簇是由三个单体形成的,其中三个 OH∙∙∙O 键产生了一个具有三个 CF3CH2 侧链的环状片段。高解离能(相对于三个单体)表明三聚体复合物具有很高的稳定性。三聚体复合物的结构特征与传统液晶分子的结构相似,因此推测其在溶液中的性质和功能也与传统液晶分子相似,但由于存在非共价键,因此时间尺度要短得多。TFE 的这种氢键现象可能与其作为膜记忆溶剂的功能有关。研究遵循标准程序。在计算过程中,使用了经验分散的混合 DFT 方法 ωB97X-D。基集 6-311++G** 是三ζ质量的,其中所有原子都添加了极化函数和扩散函数。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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