Salah Knani, Sarra Wjihi, Mohamed Bouzid, Luis Felipe Oliveira Silva, Marcos Leandro Silva Oliveira, Safwat A. Mahmoud, Abdulaziz Alenazi, Ridha Selmi, Abdulmajeed Alshammari
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引用次数: 0
Abstract
Context
In this comparative study of the adsorption of l-phenylalanine (l-Phe) on two modified low-activated carbons (ACK and ACZ) at four temperatures (293–313 K), steric and energetic characteristics of adsorption were investigated. An advanced statistical physics multilayer model involving single-layer and double-layer adsorption scenarios was developed to interpret the l-Phe adsorption phenomenon. Modeling results indicate that two and three l-Phe layers were arranged depending on the tested adsorption systems. The estimated number of l-Phe molecules per leading adsorption site varied from 1.71 to 2.09 and from 1.76 to 1.86 for systems l-Phe-ACK and l-Phe-ACZ, respectively. The results show that a multimolecular adsorption mechanism might connect this amino acid molecule on ACZ and ACK surfaces in a non-parallel location. These parameters changed as follows, according to the adsorbed quantity at saturation analysis: Qasat (l-Phe-ACK) ˃ Qasat (l-Phe-ACZ). This indicates that ACK material was more efficient and valuable for l-Phe adsorption than ACZ. It was also shown that the adsorption capacity decreases as the temperature increases, proving the exothermicity of the adsorption process. This analytical substantiation is confirmed by calculating the binding energies, suggesting the occurrence of physical bonds between l-Phe amino acid molecules and ACK/ACZ binding sites and among l-Phe–l-Phe molecules. Pore size distribution was interpreted and calculated by applying the Kelvin theory to data from single adsorption isotherms. All used temperatures depicted a distribution of pores below 2 nm. The docking analysis involving l-Phe and the ACZ and ACK adsorbents reveal a significant resemblance in how receptors detect ligands. Consequently, the findings from the docking process confirm that the calculated binding affinities fall within the spectrum of adsorption energy.
Methods
This study analyzed the adsorption capacity of the l-Phe through a model proposed by statistical physics formalism. Molecular docking was used to determine the various types of interactions between the two activated carbons. Two aspects, including orientation of l-Phe on the site, number of molecules per site n, interaction energy, density of receptor site, and adsorption capacity, were discussed to elucidate the influence of activation on the two adsorbents.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.