A statistical physics–based physicochemical study of l-phenylalanine adsorption on activated carbon

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Salah Knani, Sarra Wjihi, Mohamed Bouzid, Luis Felipe Oliveira Silva, Marcos Leandro Silva Oliveira, Safwat A. Mahmoud, Abdulaziz Alenazi, Ridha Selmi, Abdulmajeed Alshammari
{"title":"A statistical physics–based physicochemical study of l-phenylalanine adsorption on activated carbon","authors":"Salah Knani,&nbsp;Sarra Wjihi,&nbsp;Mohamed Bouzid,&nbsp;Luis Felipe Oliveira Silva,&nbsp;Marcos Leandro Silva Oliveira,&nbsp;Safwat A. Mahmoud,&nbsp;Abdulaziz Alenazi,&nbsp;Ridha Selmi,&nbsp;Abdulmajeed Alshammari","doi":"10.1007/s00894-024-06142-5","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>In this comparative study of the adsorption of <span>l</span>-phenylalanine (<span>l</span>-Phe) on two modified low-activated carbons (ACK and ACZ) at four temperatures (293–313 K), steric and energetic characteristics of adsorption were investigated. An advanced statistical physics multilayer model involving single-layer and double-layer adsorption scenarios was developed to interpret the <span>l</span>-Phe adsorption phenomenon. Modeling results indicate that two and three <span>l</span>-Phe layers were arranged depending on the tested adsorption systems. The estimated number of <span>l</span>-Phe molecules per leading adsorption site varied from 1.71 to 2.09 and from 1.76 to 1.86 for systems <span>l</span>-Phe-ACK and <span>l</span>-Phe-ACZ, respectively. The results show that a multimolecular adsorption mechanism might connect this amino acid molecule on ACZ and ACK surfaces in a non-parallel location. These parameters changed as follows, according to the adsorbed quantity at saturation analysis: <i>Q</i><sub>asat</sub> (<span>l</span>-Phe-ACK) ˃ <i>Q</i><sub>asat</sub> (<span>l</span>-Phe-ACZ). This indicates that ACK material was more efficient and valuable for <span>l</span>-Phe adsorption than ACZ. It was also shown that the adsorption capacity decreases as the temperature increases, proving the exothermicity of the adsorption process. This analytical substantiation is confirmed by calculating the binding energies, suggesting the occurrence of physical bonds between <span>l</span>-Phe amino acid molecules and ACK/ACZ binding sites and among <span>l</span>-Phe–<span>l</span>-Phe molecules. Pore size distribution was interpreted and calculated by applying the Kelvin theory to data from single adsorption isotherms. All used temperatures depicted a distribution of pores below 2 nm. The docking analysis involving <span>l</span>-Phe and the ACZ and ACK adsorbents reveal a significant resemblance in how receptors detect ligands. Consequently, the findings from the docking process confirm that the calculated binding affinities fall within the spectrum of adsorption energy.</p><h3>Methods</h3><p>This study analyzed the adsorption capacity of the <span>l</span>-Phe through a model proposed by statistical physics formalism. Molecular docking was used to determine the various types of interactions between the two activated carbons. Two aspects, including orientation of <span>l</span>-Phe on the site, number of molecules per site <i>n</i>, interaction energy, density of receptor site, and adsorption capacity, were discussed to elucidate the influence of activation on the two adsorbents.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":null,"pages":null},"PeriodicalIF":2.1000,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-024-06142-5","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Context

In this comparative study of the adsorption of l-phenylalanine (l-Phe) on two modified low-activated carbons (ACK and ACZ) at four temperatures (293–313 K), steric and energetic characteristics of adsorption were investigated. An advanced statistical physics multilayer model involving single-layer and double-layer adsorption scenarios was developed to interpret the l-Phe adsorption phenomenon. Modeling results indicate that two and three l-Phe layers were arranged depending on the tested adsorption systems. The estimated number of l-Phe molecules per leading adsorption site varied from 1.71 to 2.09 and from 1.76 to 1.86 for systems l-Phe-ACK and l-Phe-ACZ, respectively. The results show that a multimolecular adsorption mechanism might connect this amino acid molecule on ACZ and ACK surfaces in a non-parallel location. These parameters changed as follows, according to the adsorbed quantity at saturation analysis: Qasat (l-Phe-ACK) ˃ Qasat (l-Phe-ACZ). This indicates that ACK material was more efficient and valuable for l-Phe adsorption than ACZ. It was also shown that the adsorption capacity decreases as the temperature increases, proving the exothermicity of the adsorption process. This analytical substantiation is confirmed by calculating the binding energies, suggesting the occurrence of physical bonds between l-Phe amino acid molecules and ACK/ACZ binding sites and among l-Phe–l-Phe molecules. Pore size distribution was interpreted and calculated by applying the Kelvin theory to data from single adsorption isotherms. All used temperatures depicted a distribution of pores below 2 nm. The docking analysis involving l-Phe and the ACZ and ACK adsorbents reveal a significant resemblance in how receptors detect ligands. Consequently, the findings from the docking process confirm that the calculated binding affinities fall within the spectrum of adsorption energy.

Methods

This study analyzed the adsorption capacity of the l-Phe through a model proposed by statistical physics formalism. Molecular docking was used to determine the various types of interactions between the two activated carbons. Two aspects, including orientation of l-Phe on the site, number of molecules per site n, interaction energy, density of receptor site, and adsorption capacity, were discussed to elucidate the influence of activation on the two adsorbents.

Abstract Image

Abstract Image

基于统计物理的活性炭对苯丙氨酸吸附的物理化学研究
背景在这项对两种改性低活性碳(ACK 和 ACZ)在四种温度(293-313 K)下吸附 l-苯丙氨酸(l-Phe)的比较研究中,研究了吸附的立体和能量特征。为了解释 l-Phe 的吸附现象,建立了一个先进的统计物理学多层模型,包括单层和双层吸附情况。建模结果表明,根据所测试的吸附体系,l-Phe 吸附层分为两层和三层。在 l-Phe-ACK 和 l-Phe-ACZ 系统中,每个前导吸附位点的 l-Phe 分子数量估计值分别为 1.71 至 2.09 和 1.76 至 1.86。结果表明,多分子吸附机制可能会使这种氨基酸分子在 ACZ 和 ACK 表面的非平行位置上连接起来。根据饱和分析时的吸附量,这些参数变化如下:Qasat(l-Phe-ACZ) ˃ Qasat(l-Phe-ACZ)。这表明 ACK 材料对 l-Phe 的吸附比 ACZ 更有效、更有价值。研究还表明,吸附容量随着温度的升高而降低,这证明了吸附过程的放热性。通过计算结合能证实了这一分析结果,表明 l-Phe 氨基酸分子与 ACK/ACZ 结合位点之间以及 l-Phe-l-Phe 分子之间存在物理结合。通过对单一吸附等温线的数据应用开尔文理论,解释并计算了孔径分布。所有使用温度下的孔分布都低于 2 nm。涉及 l-Phe、ACZ 和 ACK 吸附剂的对接分析表明,受体检测配体的方式非常相似。因此,对接过程的结果证实,计算出的结合亲和力属于吸附能谱范围。分子对接用于确定两个活性碳之间的各种相互作用。从l-Phe在受体位点上的取向、每个受体位点的分子数n、相互作用能、受体位点密度和吸附容量两个方面进行了讨论,以阐明活化对两种吸附剂的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信