CRNN-Refined Spatiotemporal Transformer for Dynamic MRI reconstruction

IF 7 2区 医学 Q1 BIOLOGY
{"title":"CRNN-Refined Spatiotemporal Transformer for Dynamic MRI reconstruction","authors":"","doi":"10.1016/j.compbiomed.2024.109133","DOIUrl":null,"url":null,"abstract":"<div><p>Magnetic Resonance Imaging (MRI) plays a pivotal role in modern clinical practice, providing detailed anatomical visualization with exceptional spatial resolution and soft tissue contrast. Dynamic MRI, aiming to capture both spatial and temporal characteristics, faces challenges related to prolonged acquisition times and susceptibility to motion artifacts. Balancing spatial and temporal resolutions becomes crucial in real-world clinical scenarios. In the realm of dynamic MRI reconstruction, while Convolutional Recurrent Neural Networks (CRNNs) struggle with long-range dependencies, CRNNs require extensive iterations, impacting efficiency. Transformers, known for their effectiveness in high-dimensional imaging, are underexplored in dynamic MRI reconstruction. Additionally, prevailing algorithms fall short of achieving superior results in demanding generative reconstructions at high acceleration rates. This research proposes a novel approach for dynamic MRI reconstruction, named CRNN-Refined Spatiotemporal Transformer Network (CST-Net). The spatiotemporal Transformer initiates reconstruction, modeling temporal and spatial correlations, followed by refinement using the CRNN. This integration mitigates inaccuracies caused by damaged frames and reduces CRNN iterations, enhancing computational efficiency without compromising reconstruction quality. Our study compares the performance of the proposed CST-Net at 6 × and 12 × undersampling rates, showcasing its superiority over existing algorithms. Particularly, in challenging 25× generative reconstructions, the CST-Net outperforms current methods. The comparison includes experiments under both radial and Cartesian undersampling patterns. In conclusion, CST-Net successfully addresses the limitations inherent in existing generative reconstruction algorithms, thereby paving the way for further exploration and optimization of Transformer-based approaches in dynamic MRI reconstruction. Code and Datasets can be available: <span><span>https://github.com/XWangBin/CST-Net</span><svg><path></path></svg></span>.</p></div>","PeriodicalId":10578,"journal":{"name":"Computers in biology and medicine","volume":null,"pages":null},"PeriodicalIF":7.0000,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computers in biology and medicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010482524012186","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Magnetic Resonance Imaging (MRI) plays a pivotal role in modern clinical practice, providing detailed anatomical visualization with exceptional spatial resolution and soft tissue contrast. Dynamic MRI, aiming to capture both spatial and temporal characteristics, faces challenges related to prolonged acquisition times and susceptibility to motion artifacts. Balancing spatial and temporal resolutions becomes crucial in real-world clinical scenarios. In the realm of dynamic MRI reconstruction, while Convolutional Recurrent Neural Networks (CRNNs) struggle with long-range dependencies, CRNNs require extensive iterations, impacting efficiency. Transformers, known for their effectiveness in high-dimensional imaging, are underexplored in dynamic MRI reconstruction. Additionally, prevailing algorithms fall short of achieving superior results in demanding generative reconstructions at high acceleration rates. This research proposes a novel approach for dynamic MRI reconstruction, named CRNN-Refined Spatiotemporal Transformer Network (CST-Net). The spatiotemporal Transformer initiates reconstruction, modeling temporal and spatial correlations, followed by refinement using the CRNN. This integration mitigates inaccuracies caused by damaged frames and reduces CRNN iterations, enhancing computational efficiency without compromising reconstruction quality. Our study compares the performance of the proposed CST-Net at 6 × and 12 × undersampling rates, showcasing its superiority over existing algorithms. Particularly, in challenging 25× generative reconstructions, the CST-Net outperforms current methods. The comparison includes experiments under both radial and Cartesian undersampling patterns. In conclusion, CST-Net successfully addresses the limitations inherent in existing generative reconstruction algorithms, thereby paving the way for further exploration and optimization of Transformer-based approaches in dynamic MRI reconstruction. Code and Datasets can be available: https://github.com/XWangBin/CST-Net.

用于动态磁共振成像重建的 CRNN 定义时空变换器
磁共振成像(MRI)在现代临床实践中发挥着举足轻重的作用,它能提供详细的解剖可视化,具有卓越的空间分辨率和软组织对比度。动态磁共振成像旨在捕捉空间和时间特征,但面临着采集时间过长和易受运动伪影影响等挑战。在实际临床应用中,平衡空间和时间分辨率变得至关重要。在动态核磁共振成像重建领域,卷积递归神经网络(CRNN)在长程依赖性问题上举步维艰,CRNN 需要大量的迭代,影响了效率。变压器因其在高维成像中的有效性而闻名,但在动态磁共振成像重建中却未得到充分开发。此外,在高加速度下进行要求苛刻的生成性重建时,现有算法也无法取得优异的结果。本研究提出了一种用于动态磁共振成像重建的新方法,命名为 CRNN-定义时空变换网络(CST-Net)。时空变换器启动重建,对时间和空间相关性进行建模,然后使用 CRNN 进行细化。这种整合可减轻损坏帧造成的误差,减少 CRNN 的迭代次数,从而在不影响重建质量的情况下提高计算效率。我们的研究比较了所提出的 CST-Net 在 6 × 和 12 × 欠采样率下的性能,显示了其优于现有算法的性能。特别是在具有挑战性的 25 × 生成重建中,CST-Net 的表现优于现有方法。比较包括径向和笛卡尔欠采样模式下的实验。总之,CST-Net 成功解决了现有生成重建算法的固有局限性,从而为进一步探索和优化基于变压器的动态磁共振成像重建方法铺平了道路。代码和数据集可通过 https://github.com/XWangBin/CST-Net 获取。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信