Valeria Gabrielli, Jelena Grga, Sabine Gavalda, Laura Perrot, Emmanuelle Boll, Guy Lippens, Cyril Charlier, Guy Lippens
{"title":"NMR at operational temperature for resonance assignments of a PET degrading enzyme","authors":"Valeria Gabrielli, Jelena Grga, Sabine Gavalda, Laura Perrot, Emmanuelle Boll, Guy Lippens, Cyril Charlier, Guy Lippens","doi":"10.1101/2024.09.10.612188","DOIUrl":null,"url":null,"abstract":"PETases are enzymes that can break down the PET polymer in its constituent building blocks, and thereby recycle starting material for new high-quality plastics. NMR spectroscopy can help in the understanding and ultimately improvement of these PETases, but is always confronted with the lengthy step of acquisition and interpretation of triple resonance spectra for the spectral assignment. Here, we explore whether this step can be made more efficient by recording the spectra directly at high temperature, which also corresponds to more realistic working conditions for the enzyme. Taking the inactive variant of LCCICCG in which the Serine 165 has been replaced by an Alanine (LCCICCG-S165A) as an example, we evaluate spectral quality at 30C and 50C, and find that the latter condition greatly improves the Signal-to-Noise (S/N) ratio of the different spectra. As a result, we present an exhaustive backbone and side-chain assignment of LCCICCG-S165A based on a minimal set of triple resonance spectra acquired at 50C, that can act as a basis for future work on bio-structural studies on this PETase.","PeriodicalId":501048,"journal":{"name":"bioRxiv - Biophysics","volume":"61 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv - Biophysics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.09.10.612188","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
PETases are enzymes that can break down the PET polymer in its constituent building blocks, and thereby recycle starting material for new high-quality plastics. NMR spectroscopy can help in the understanding and ultimately improvement of these PETases, but is always confronted with the lengthy step of acquisition and interpretation of triple resonance spectra for the spectral assignment. Here, we explore whether this step can be made more efficient by recording the spectra directly at high temperature, which also corresponds to more realistic working conditions for the enzyme. Taking the inactive variant of LCCICCG in which the Serine 165 has been replaced by an Alanine (LCCICCG-S165A) as an example, we evaluate spectral quality at 30C and 50C, and find that the latter condition greatly improves the Signal-to-Noise (S/N) ratio of the different spectra. As a result, we present an exhaustive backbone and side-chain assignment of LCCICCG-S165A based on a minimal set of triple resonance spectra acquired at 50C, that can act as a basis for future work on bio-structural studies on this PETase.
PET 酶是一种能将 PET 聚合物分解为其组成构件的酶,从而循环利用起始材料制造新的优质塑料。核磁共振光谱有助于了解并最终改进这些 PET 酶,但始终面临着获取和解释三重共振谱以进行光谱分配的漫长步骤。在此,我们探讨了是否可以通过在高温下直接记录光谱来提高这一步骤的效率,因为高温也符合酶的更实际工作条件。以丝氨酸 165 被丙氨酸取代的 LCCICCG 非活性变体(LCCICCG-S165A)为例,我们分别在 30C 和 50C 温度下对光谱质量进行了评估,结果发现后者大大提高了不同光谱的信噪比(S/N)。因此,我们根据在 50C 温度下获得的一组最小的三重共振谱,对 LCCICCG-S165A 进行了详尽的骨架和侧链分配,为今后对这种 PET 酶进行生物结构研究奠定了基础。