Geometry of the Space of Partitioned Networks: A Unified Theoretical and Computational Framework

Stephen Y Zhang, Fangfei Lan, Youjia Zhou, Agnese Barbensi, Michael P H Stumpf, Bei Wang, Tom Needham
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Abstract

Interactions and relations between objects may be pairwise or higher-order in nature, and so network-valued data are ubiquitous in the real world. The "space of networks", however, has a complex structure that cannot be adequately described using conventional statistical tools. We introduce a measure-theoretic formalism for modeling generalized network structures such as graphs, hypergraphs, or graphs whose nodes come with a partition into categorical classes. We then propose a metric that extends the Gromov-Wasserstein distance between graphs and the co-optimal transport distance between hypergraphs. We characterize the geometry of this space, thereby providing a unified theoretical treatment of generalized networks that encompasses the cases of pairwise, as well as higher-order, relations. In particular, we show that our metric is an Alexandrov space of non-negative curvature, and leverage this structure to define gradients for certain functionals commonly arising in geometric data analysis tasks. We extend our analysis to the setting where vertices have additional label information, and derive efficient computational schemes to use in practice. Equipped with these theoretical and computational tools, we demonstrate the utility of our framework in a suite of applications, including hypergraph alignment, clustering and dictionary learning from ensemble data, multi-omics alignment, as well as multiscale network alignment.
分区网络空间几何:统一的理论和计算框架
物体之间的相互作用和关系可能是成对的,也可能是高阶的,因此网络价值数据在现实世界中无处不在。然而,"网络空间 "具有复杂的结构,传统的统计工具无法对其进行充分描述。我们介绍了一种度量理论形式主义,用于对广义网络结构建模,如图、超图或节点带有类别分区的图。然后,我们提出了一种度量,它扩展了图之间的格罗莫夫-瓦瑟斯坦距离和超图之间的共优传输距离。我们描述了这一空间的几何特征,从而为广义网络提供了一种统一的理论处理方法,它涵盖了成对关系和高阶关系的情况。特别是,我们证明了我们的度量是一个非负曲率的亚历山德罗夫空间,并利用这一结构定义了几何数据分析任务中常见的某些函数的梯度。我们将分析扩展到顶点具有额外标签信息的情况,并提出了在实践中使用的高效计算方案。有了这些理论和计算工具,我们展示了我们的框架在一系列应用中的实用性,包括超图配准、从集合数据中进行聚类和字典学习、多组学配准以及多尺度网络配准。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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