Subnetwork Enumeration Algorithms for Multilayer Networks

Abstract

To understand the structure of a network, it can be useful to break it down into its constituent pieces. This is the approach taken in a multitude of successful network analysis methods, such as motif analysis. These methods require one to enumerate or sample small connected subgraphs of a network. Efficient algorithms exists for both enumeration and uniform sampling of subgraphs, and here we generalize the esu algorithm for a very general notion of multilayer networks. We show that multilayer network subnetwork enumeration introduces nontrivial complications to the existing algorithm, and present two different generalized algorithms that preserve the desired features of unbiased sampling and scalable, communication-free parallelization. In addition, we introduce a straightforward aggregation-disaggregation-based enumeration algorithm that leverages existing subgraph enumeration algorithms. We evaluate these algorithms in synthetic networks and with real-world data, and show that none of the algorithms is strictly more efficient but rather the choice depends on the features of the data. Having a general algorithm for finding subnetworks makes advanced multilayer network analysis possible, and enables researchers to apply a variety of methods to previously difficult-to-handle multilayer networks in a variety of domains and across many different types of multilayer networks.