In silico approach for identification of potential tetracyclic triterpenoids from mushroom as HMG-CoA reductase inhibitor

Rishav Mazumder , Deijy Choudhury , Alekhya Sarkar , Ashmita Ghosh , Sudhan Debnath , Bimal Debnath , Rajat Ghosh
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Abstract

Cardiovascular disease is estimated to be responsible for one-third of all global deaths annually. It occurs mostly due to hyperlipidemia, a condition where excessive cholesterol deposits in blood vessels. A favorable target for treating hyperlipidemia involves the crucial role of inhibition of a specific enzyme known as 3-Hydroxy-3-methylglutaryl coenzyme A reductase (HMG-CoA reductase). The primary goal of this present study is to identify potential HMG-CoA reductase inhibitors containing tetracyclic triterpene nucleus derived from mushrooms. A library of 86 myco-constituents bearing a tetracyclic triterpene scaffold was prepared and screened to identify potential HMG-CoA reductase inhibitors targeting proteins 1HW8 and 1HW9. For this purpose, molecular docking, ADME prediction, and molecular dynamics (MD) simulation studies were performed on this in-house prepared database. The virtual screening results exhibited M_02(c) as the best hit with promising SP Glide scores compared to standard statin drugs. In order to assess the stability and interactions, a 100 ns MD simulation was performed. Further, M_02(c) was also analysed for MMGBSA binding energy to access and validate the thermodynamic stability of the protein-ligand complex. The results of this study revealed that M_02(c) is a promising hit molecule and may emerge as a potent HMG-CoA reductase inhibitor in preventing and treating hyperlipidemia.

Abstract Image

从蘑菇中鉴定潜在四环三萜类 HMG-CoA 还原酶抑制剂的硅学方法
据估计,全球每年有三分之一的人死于心血管疾病。心血管疾病主要是由于高脂血症引起的,高脂血症是一种胆固醇过多沉积在血管中的病症。治疗高脂血症的一个有利靶点是抑制一种被称为 3-羟基-3-甲基戊二酰辅酶 A 还原酶(HMG-CoA 还原酶)的特定酶的关键作用。本研究的主要目的是找出潜在的 HMG-CoA 还原酶抑制剂,这些抑制剂含有从蘑菇中提取的四环三萜核。本研究制备并筛选了包含四环三萜支架的 86 种菌类成分库,以确定潜在的 HMG-CoA 还原酶抑制剂,这些抑制剂的靶向蛋白为 1HW8 和 1HW9。为此,在该内部制备的数据库中进行了分子对接、ADME 预测和分子动力学(MD)模拟研究。虚拟筛选结果显示,与标准他汀类药物相比,M_02(c)是SP Glide得分最高的药物。为了评估其稳定性和相互作用,进行了 100 ns 的 MD 模拟。此外,还对 M_02(c)进行了 MMGBSA 结合能分析,以获得并验证蛋白质配体的热力学稳定性。研究结果表明,M_02(c) 是一种很有前景的新分子,有可能成为一种有效的 HMG-CoA 还原酶抑制剂,用于预防和治疗高脂血症。
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来源期刊
Aspects of molecular medicine
Aspects of molecular medicine Molecular Biology, Molecular Medicine
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