Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Yan-Xia Shi , Dan-Dan Bian , Xin Liu , Jun-Jie Jiang , Xi-Rong Zhu , Dai-Zhen Zhang , Qiu-Ning Liu , Bo-Ping Tang , Li-Shang Dai
{"title":"Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure","authors":"Yan-Xia Shi ,&nbsp;Dan-Dan Bian ,&nbsp;Xin Liu ,&nbsp;Jun-Jie Jiang ,&nbsp;Xi-Rong Zhu ,&nbsp;Dai-Zhen Zhang ,&nbsp;Qiu-Ning Liu ,&nbsp;Bo-Ping Tang ,&nbsp;Li-Shang Dai","doi":"10.1016/j.cbd.2024.101320","DOIUrl":null,"url":null,"abstract":"<div><p>Zinc is a significant source of heavy metal pollution that poses risks to both human health and biodiversity. Excessive concentrations of zinc can hinder the growth and development of insects and trigger cell death through oxidative damage. The midgut is the main organ affected by exposure to heavy metals. The silkworm, a prominent insect species belonging to the <em>Lepidoptera</em> class and widely used in China, serves as a model for studying the genetic response to heavy metal stress. In this study, high-throughput sequencing technology was employed to investigate detoxification-related genes in the midgut that are induced by zinc exposure. A total of 11,320 unigenes and 14,723 transcripts were identified, with 553 differentially expressed genes (DEGs) detected, among which 394 were up-regulated and 159 were down-regulated. The Gene Ontology (GO) analysis revealed that 452 DEGs were involved in 18 biological process subclasses, 14 cellular component subclasses and 8 molecular functional subclasses. Furthermore, the KEGG analysis demonstrated enrichment in pathways such as Protein digestion, absorption and Lysosome. Validation of the expression levels of 9 detoxification-related DEGs through qRT-PCR confirmed the accuracy of the RNA-seq results. This study not only contributes new insights into the detoxification mechanisms mechanism of silkworms against zinc contamination, but also serves as a foundation basis for understanding the molecular detoxification processes in lepidopteran insects.</p></div>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1744117X24001333","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0

Abstract

Zinc is a significant source of heavy metal pollution that poses risks to both human health and biodiversity. Excessive concentrations of zinc can hinder the growth and development of insects and trigger cell death through oxidative damage. The midgut is the main organ affected by exposure to heavy metals. The silkworm, a prominent insect species belonging to the Lepidoptera class and widely used in China, serves as a model for studying the genetic response to heavy metal stress. In this study, high-throughput sequencing technology was employed to investigate detoxification-related genes in the midgut that are induced by zinc exposure. A total of 11,320 unigenes and 14,723 transcripts were identified, with 553 differentially expressed genes (DEGs) detected, among which 394 were up-regulated and 159 were down-regulated. The Gene Ontology (GO) analysis revealed that 452 DEGs were involved in 18 biological process subclasses, 14 cellular component subclasses and 8 molecular functional subclasses. Furthermore, the KEGG analysis demonstrated enrichment in pathways such as Protein digestion, absorption and Lysosome. Validation of the expression levels of 9 detoxification-related DEGs through qRT-PCR confirmed the accuracy of the RNA-seq results. This study not only contributes new insights into the detoxification mechanisms mechanism of silkworms against zinc contamination, but also serves as a foundation basis for understanding the molecular detoxification processes in lepidopteran insects.

Abstract Image

转录组分析为了解蚕在锌暴露下的机理提供了新的视角
锌是重金属污染的一个重要来源,对人类健康和生物多样性都构成风险。锌浓度过高会阻碍昆虫的生长和发育,并通过氧化损伤引发细胞死亡。中肠是受重金属影响的主要器官。家蚕是中国广泛使用的鳞翅目昆虫,是研究重金属胁迫遗传响应的模型。本研究采用高通量测序技术研究了锌暴露诱导的中肠解毒相关基因。研究共鉴定了11 320个单基因和14 723个转录本,发现了553个差异表达基因(DEGs),其中394个上调,159个下调。基因本体(GO)分析显示,452 个 DEGs 涉及 18 个生物过程亚类、14 个细胞组分亚类和 8 个分子功能亚类。此外,KEGG 分析还显示了蛋白质消化、吸收和溶酶体等通路的富集。通过 qRT-PCR 验证了 9 个与解毒相关的 DEGs 的表达水平,证实了 RNA-seq 结果的准确性。这项研究不仅对家蚕抗锌污染的解毒机制有了新的认识,也为了解鳞翅目昆虫的分子解毒过程奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信