Complete chloroplast genome of endangered species Dipterocarpus retusus Blume (Dipterocarpaceae) and its phylogenetic implications.

IF 0.5 4区 生物学 Q4 GENETICS & HEREDITY
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2387257
Yu-Tian Tao, Meng Yuan, Qin-Qin Li, Zhong-Shuai Sun
{"title":"Complete chloroplast genome of endangered species <i>Dipterocarpus retusus</i> Blume (Dipterocarpaceae) and its phylogenetic implications.","authors":"Yu-Tian Tao, Meng Yuan, Qin-Qin Li, Zhong-Shuai Sun","doi":"10.1080/23802359.2024.2387257","DOIUrl":null,"url":null,"abstract":"<p><p><i>Dipterocarpus retusus</i> Blume is an endangered species on the IUCN Red List. In this study, we reported the complete chloroplast (cp) genome of <i>D. retusus</i> (GenBank accession number: OP271853). The cp genome was 154,303 bp long, with a large single-copy (LSC) region of 85,586 bp and a small single-copy (SSC) region of 20,273 bp separated by a pair of inverted repeats (IRs) of 24,222 bp. It encodes 128 genes, including 84 protein-coding genes, 36 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the cp genome phylogeny of <i>Dipterocarpus</i>, which indicated <i>D. retusus</i> was closely related with the sympatric species <i>D. gracilis</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Dipterocarpus</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370694/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2387257","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Dipterocarpus retusus Blume is an endangered species on the IUCN Red List. In this study, we reported the complete chloroplast (cp) genome of D. retusus (GenBank accession number: OP271853). The cp genome was 154,303 bp long, with a large single-copy (LSC) region of 85,586 bp and a small single-copy (SSC) region of 20,273 bp separated by a pair of inverted repeats (IRs) of 24,222 bp. It encodes 128 genes, including 84 protein-coding genes, 36 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the cp genome phylogeny of Dipterocarpus, which indicated D. retusus was closely related with the sympatric species D. gracilis. This study may contribute valuable information to the phylogenetic relationships within the genus Dipterocarpus.

濒危物种Dipterocarpus retus Blume(Dipterocarpaceae)的完整叶绿体基因组及其系统发育意义。
Dipterocarpus retusus Blume 是世界自然保护联盟红色名录上的濒危物种。在这项研究中,我们报告了D. retus的完整叶绿体(cp)基因组(GenBank登录号:OP271853)。cp基因组长154,303 bp,其中大单拷贝(LSC)区长85,586 bp,小单拷贝(SSC)区长20,273 bp,被一对长24,222 bp的倒置重复序列(IR)隔开。它编码 128 个基因,包括 84 个蛋白质编码基因、36 个 tRNA 基因和 8 个核糖体 RNA 基因。我们还重建了Dipterocarpus的cp基因组系统发育,结果表明D. retusus与同域物种D. gracilis亲缘关系密切。这项研究可能会对Dipterocarpus属内部的系统发育关系提供有价值的信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信