CuPCA: a web server for pan-cancer association analysis of large-scale cuproptosis-related genes.

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Yishu Xu, Zhenshu Ma, Yajie Wang, Long Zhang, Jiaming Ye, Yuan Chen, Zhengrong Yuan
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引用次数: 0

Abstract

Copper-induced cell death is a novel mechanism of cell death, which is defined as cuproptosis. The increasing level of copper can produce toxicity in cells and may cause the occurrence of cell death. Several previous studies have proved that cuproptosis has a tight association with various cancers. Thus, the discovery of relationships between cuproptosis-related genes (CRGs) and human cancers is of great importance. Pan-cancer analysis can efficiently help researchers find out the relationship between multiple cancers and target genes precisely and make various prognostic analyses on cancers and cancer patients. Pan-cancer web servers can provide researchers with direct results of pan-cancer prognostic analyses, which can greatly improve the efficiency of their work. However, to date, no web server provides pan-cancer analysis about CRGs. Therefore, we introduce the cuproptosis pan-cancer analysis database (CuPCA), the first database for various analysis results of CRGs through 33 cancer types. CuPCA is a user-friendly resource for cancer researchers to gain various prognostic analyses between cuproptosis and cancers. It provides single CRG pan-cancer analysis, multi-CRGs pan-cancer analysis, multi-CRlncRNA pan-cancer analysis, and mRNA-circRNA-lncRNA conjoint analysis. These analysis results can not only indicate the relationship between cancers and cuproptosis at both gene level and protein level, but also predict the conditions of different cancer patients, which include their clinical condition, survival condition, and their immunological condition. CuPCA procures the delivery of analyzed data to end users, which improves the efficiency of wide research as well as releases the value of data resources. Database URL: http://cupca.cn/.

CuPCA:用于大规模杯突相关基因泛癌症关联分析的网络服务器。
铜诱导的细胞死亡是一种新的细胞死亡机制,被定义为杯突症。铜含量的增加会对细胞产生毒性,并可能导致细胞死亡。之前的一些研究已经证明,铜中毒与各种癌症有着密切的联系。因此,发现铜氧化相关基因(CRGs)与人类癌症之间的关系非常重要。泛癌症分析可以有效地帮助研究人员精确地发现多种癌症与靶基因之间的关系,并对癌症和癌症患者进行各种预后分析。泛癌网络服务器可以为研究人员提供直接的泛癌预后分析结果,从而大大提高他们的工作效率。然而,迄今为止,还没有一个网络服务器提供有关 CRG 的泛癌症分析。因此,我们引入了杯突病泛癌症分析数据库(CuPCA),这是首个包含 33 种癌症类型的 CRGs 各种分析结果的数据库。CuPCA 是癌症研究人员获得杯突与癌症之间各种预后分析的友好资源。它提供单CRG泛癌分析、多CRG泛癌分析、多CRlncRNA泛癌分析和mRNA-circRNA-lncRNA联合分析。这些分析结果不仅能在基因水平和蛋白质水平上指出癌症与杯突症的关系,还能预测不同癌症患者的病情,包括其临床状况、生存状况和免疫状况。CuPCA 将分析数据交付给最终用户,从而提高了广泛研究的效率,并释放了数据资源的价值。数据库网址:http://cupca.cn/.
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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