Hongbo Chen , Logiraj Kumaralingam , Shuhang Zhang , Sheng Song , Fayi Zhang , Haibin Zhang , Thanh-Tu Pham , Kumaradevan Punithakumar , Edmond H.M. Lou , Yuyao Zhang , Lawrence H. Le , Rui Zheng
{"title":"Neural implicit surface reconstruction of freehand 3D ultrasound volume with geometric constraints","authors":"Hongbo Chen , Logiraj Kumaralingam , Shuhang Zhang , Sheng Song , Fayi Zhang , Haibin Zhang , Thanh-Tu Pham , Kumaradevan Punithakumar , Edmond H.M. Lou , Yuyao Zhang , Lawrence H. Le , Rui Zheng","doi":"10.1016/j.media.2024.103305","DOIUrl":null,"url":null,"abstract":"<div><p>Three-dimensional (3D) freehand ultrasound (US) is a widely used imaging modality that allows non-invasive imaging of medical anatomy without radiation exposure. Surface reconstruction of US volume is vital to acquire the accurate anatomical structures needed for modeling, registration, and visualization. However, traditional methods cannot produce a high-quality surface due to image noise. Despite improvements in smoothness, continuity, and resolution from deep learning approaches, research on surface reconstruction in freehand 3D US is still limited. This study introduces FUNSR, a self-supervised neural implicit surface reconstruction method to learn signed distance functions (SDFs) from US volumes. In particular, FUNSR iteratively learns the SDFs by moving the 3D queries sampled around volumetric point clouds to approximate the surface, guided by two novel geometric constraints: sign consistency constraint and on-surface constraint with adversarial learning. Our approach has been thoroughly evaluated across four datasets to demonstrate its adaptability to various anatomical structures, including a hip phantom dataset, two vascular datasets and one publicly available prostate dataset. We also show that smooth and continuous representations greatly enhance the visual appearance of US data. Furthermore, we highlight the potential of our method to improve segmentation performance, and its robustness to noise distribution and motion perturbation.</p></div>","PeriodicalId":18328,"journal":{"name":"Medical image analysis","volume":"98 ","pages":"Article 103305"},"PeriodicalIF":10.7000,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Medical image analysis","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1361841524002305","RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0
Abstract
Three-dimensional (3D) freehand ultrasound (US) is a widely used imaging modality that allows non-invasive imaging of medical anatomy without radiation exposure. Surface reconstruction of US volume is vital to acquire the accurate anatomical structures needed for modeling, registration, and visualization. However, traditional methods cannot produce a high-quality surface due to image noise. Despite improvements in smoothness, continuity, and resolution from deep learning approaches, research on surface reconstruction in freehand 3D US is still limited. This study introduces FUNSR, a self-supervised neural implicit surface reconstruction method to learn signed distance functions (SDFs) from US volumes. In particular, FUNSR iteratively learns the SDFs by moving the 3D queries sampled around volumetric point clouds to approximate the surface, guided by two novel geometric constraints: sign consistency constraint and on-surface constraint with adversarial learning. Our approach has been thoroughly evaluated across four datasets to demonstrate its adaptability to various anatomical structures, including a hip phantom dataset, two vascular datasets and one publicly available prostate dataset. We also show that smooth and continuous representations greatly enhance the visual appearance of US data. Furthermore, we highlight the potential of our method to improve segmentation performance, and its robustness to noise distribution and motion perturbation.
三维(3D)徒手超声(US)是一种广泛使用的成像模式,可对医学解剖结构进行无创成像,且无辐射暴露。要获得建模、配准和可视化所需的精确解剖结构,对 US 容积的表面重建至关重要。然而,由于图像噪声,传统方法无法生成高质量的表面。尽管深度学习方法在平滑度、连续性和分辨率方面有所改进,但有关徒手三维 US 表面重建的研究仍然有限。本研究介绍了一种自监督神经隐式曲面重建方法 FUNSR,该方法可从 US 体积中学习符号距离函数 (SDF)。具体来说,FUNSR 通过移动在体积点云周围采样的三维查询来迭代学习 SDF,从而逼近表面,并以两个新颖的几何约束为指导:符号一致性约束和对抗学习的表面约束。我们在四个数据集上对该方法进行了全面评估,以证明其对各种解剖结构的适应性,包括一个髋关节模型数据集、两个血管数据集和一个公开的前列腺数据集。我们还表明,平滑和连续的表示方法大大增强了 US 数据的视觉效果。此外,我们还强调了我们的方法在提高分割性能方面的潜力,以及它对噪声分布和运动扰动的鲁棒性。
期刊介绍:
Medical Image Analysis serves as a platform for sharing new research findings in the realm of medical and biological image analysis, with a focus on applications of computer vision, virtual reality, and robotics to biomedical imaging challenges. The journal prioritizes the publication of high-quality, original papers contributing to the fundamental science of processing, analyzing, and utilizing medical and biological images. It welcomes approaches utilizing biomedical image datasets across all spatial scales, from molecular/cellular imaging to tissue/organ imaging.