Revisiting Shooting Point Monte Carlo Methods for Transition Path Sampling

Sebastian Falkner, Alessandro Coretti, Baron Peters, Peter G. Bolhuis, Christoph Dellago
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Abstract

Rare event sampling algorithms are essential for understanding processes that occur infrequently on the molecular scale, yet they are important for the long-time dynamics of complex molecular systems. One of these algorithms, transition path sampling, has become a standard technique to study such rare processes since no prior knowledge on the transition region is required. Most TPS methods generate new trajectories from old trajectories by selecting a point along the old trajectory, modifying its momentum in some way, and then ``shooting'' a new trajectory by integrating forward and backward in time. In some procedures, the shooting point is selected independently for each trial move, but in others, the shooting point evolves from one path to the next so that successive shooting points are related to each other. We provide an extended detailed balance criterion for shooting methods. We affirm detailed balance for most TPS methods, but the new criteria reveals the need for amended acceptance criteria in the flexible length aimless shooting and spring shooting methods.
重新审视过渡路径采样的射点蒙特卡洛方法
稀有事件采样算法对于理解分子尺度上不常发生的过程至关重要,但它们对于复杂分子系统的长时动力学也很重要。这些算法中的过渡路径采样已成为研究此类罕见过程的标准技术,因为无需事先了解过渡区域。大多数过渡路径采样方法通过沿旧轨迹选择一个点,以某种方式修改其动量,然后通过时间的前后积分 "射 "出一条新轨迹,从而从旧轨迹生成新轨迹。在某些程序中,射击点是为每个试验动作独立选择的,但在另一些程序中,射击点会从一条路径发展到下一条路径,从而使连续的射击点彼此相关。我们为射击方法提供了一个扩展的详细平衡标准。我们肯定了大多数 TPS 方法的详细平衡性,但新标准揭示了在灵活长度无目标射击和弹簧射击方法中修正验收标准的必要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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