Mitochondrial ND4-based duplex PCR for identifying tiger species

Pub Date : 2024-07-29 DOI:10.1007/s12686-024-01364-4
Yang Gao, Shiyao Wu, Xuanye Wu, Wulin Liu, Dong Zheng, Xuedong Liu, Kun Jin
{"title":"Mitochondrial ND4-based duplex PCR for identifying tiger species","authors":"Yang Gao, Shiyao Wu, Xuanye Wu, Wulin Liu, Dong Zheng, Xuedong Liu, Kun Jin","doi":"10.1007/s12686-024-01364-4","DOIUrl":null,"url":null,"abstract":"<p>To identify tiger species on the basis of suspected feces or fur samples collected during field surveys, we developed a duplex PCR system that co-amplified two mitochondrial DNA (mtDNA) amplicons to simultaneously generate a mtDNA quality marker (221 bp) from the <i>cytochrome b (MT-CYB)</i> gene and a tiger marker (314 bp) from the <i>NADH dehydrogenase subunit 4 (MT-ND4)</i> gene. Appearance of the former marker indicated sample-derived mtDNA quality, and the tiger marker was present in the tiger samples but absent from non-tiger samples. A blind test of a suspected tiger fecal sample validated reliability of our system, and a parallel experiment using a previously published approach further confirmed the accuracy of our system. This method has significant practical value for the field management and conservation of tigers because it can be used to analyze suspected samples.</p>","PeriodicalId":0,"journal":{"name":"","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1007/s12686-024-01364-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

To identify tiger species on the basis of suspected feces or fur samples collected during field surveys, we developed a duplex PCR system that co-amplified two mitochondrial DNA (mtDNA) amplicons to simultaneously generate a mtDNA quality marker (221 bp) from the cytochrome b (MT-CYB) gene and a tiger marker (314 bp) from the NADH dehydrogenase subunit 4 (MT-ND4) gene. Appearance of the former marker indicated sample-derived mtDNA quality, and the tiger marker was present in the tiger samples but absent from non-tiger samples. A blind test of a suspected tiger fecal sample validated reliability of our system, and a parallel experiment using a previously published approach further confirmed the accuracy of our system. This method has significant practical value for the field management and conservation of tigers because it can be used to analyze suspected samples.

Abstract Image

分享
查看原文
基于线粒体 ND4 的双链 PCR 鉴定老虎物种
为了根据野外调查中收集到的疑似粪便或皮毛样本鉴定老虎的种类,我们开发了一种双工 PCR 系统,该系统可共同扩增两个线粒体 DNA(mtDNA)扩增子,以同时生成细胞色素 b(MT-CYB)基因的 mtDNA 质量标记(221 bp)和 NADH 脱氢酶亚基 4(MT-ND4)基因的老虎标记(314 bp)。前一个标记的出现表明样本中的 mtDNA 质量,而虎标记出现在虎样本中,但不出现在非虎样本中。对疑似老虎粪便样本的盲测验证了我们系统的可靠性,而使用以前发表的方法进行的平行实验进一步证实了我们系统的准确性。这种方法可用于分析可疑样本,因此对老虎的野外管理和保护具有重要的实用价值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信