Linking the spatial and genomic structure of adaptive potential for conservation management: a review.

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Genome Pub Date : 2024-11-01 Epub Date: 2024-07-31 DOI:10.1139/gen-2024-0036
Avneet K Chhina, Niloufar Abhari, Arne Mooers, Jayme M M Lewthwaite
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引用次数: 0

Abstract

We unified the recent literature with the goal to contribute to the discussion on how genetic diversity might best be conserved. We argue that this decision will be guided by how genomic variation is distributed among manageable populations (i.e., its spatial structure), the degree to which adaptive potential is best predicted by variation across the entire genome or the subset of that variation that is identified as putatively adaptive (i.e., its genomic structure), and whether we are managing species as single entities or as collections of diversifying lineages. The distribution of genetic variation and our ultimate goal will have practical implications for on-the-ground management. If adaptive variation is largely polygenic or responsive to change, its spatial structure might be broadly governed by the forces determining genome-wide variation (linked selection, drift, and gene flow), making measurement and prioritization straightforward. If we are managing species as single entities, then population-level prioritization schemes are possible so as to maximize future pooled genetic variation. We outline one such scheme based on the popular Shapley value from cooperative game theory that considers the relative genetic contribution of a population to an unknown future collection of populations.

将适应潜力的空间结构和基因组结构联系起来进行保护管理:综述。
我们统一了近期的文献,目的是为关于如何最好地保护遗传多样性的讨论做出贡献。我们认为,基因组变异在可管理种群中的分布情况(即其空间结构)、整个基因组的变异在多大程度上能最好地预测适应潜力,或变异中被确定为可能具有适应性的子集(即其基因组结构),以及我们是将物种作为单一实体还是作为多样化品系的集合来管理,都将对这一决策产生指导作用。基因变异的分布和我们的最终目标将对实地管理产生实际影响。如果适应性变异在很大程度上是多基因变异或对变化的反应性变异,其空间结构可能会受到决定全基因组变异的力量(关联选择、漂移和基因流)的广泛制约,从而使测量和优先排序变得简单明了。如果我们将物种作为单一实体进行管理,那么种群层面的优先排序方案是可行的,这样可以最大限度地增加未来的集合遗传变异。我们根据合作博弈论中流行的夏普利值(Shapley Value)概述了这样一种方案,它考虑了一个种群对未来未知种群集合的相对遗传贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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