A treecode algorithm for the Poisson equation in a general domain with unstructured grids

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Zixuan Cui, Lei Yang, Jing Wu, Guanghui Hu
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引用次数: 0

Abstract

Since the seminal work in 1986, the treecode algorithm has been widely used in a variety of science and engineering problems, such as the electrostatic and magnetostatic fields calculations. With the continuous advancements of science exploration and engineering applications, efficient numerical simulations for problems defined on complex domains have become increasingly necessary. In this paper, based on a hierarchy geometry tree, an efficient implementation of the treecode algorithm is described in detail for the numerical solution of a Poisson equation defined on a general domain. The features of our algorithm include: i) with the hierarchy geometry tree, the neighbor and non-neighbor patches for a given element can be generated efficiently, ii) no restriction on the geometry of the domain, which means that our algorithm can be applied for general problem, iii) the desired computational complexity \({\varvec{\mathcal {O}}}(\varvec{N}\,\varvec{\log }\,{\varvec{N}})\) can be observed well, where \(\varvec{N}\) denotes the number of degrees of freedom in the domain, and iv) very friendly to the parallel computing, i.e., an ideal speedup can be observed successfully from numerical results with OpenMP technique. It is believed that our solution potentially is a quality candidate for implementing the treecode algorithm for problems defined on general domains with unstructured grids.

Abstract Image

非结构网格一般域中泊松方程的树形编码算法
自 1986 年的开创性工作以来,树码算法已广泛应用于各种科学和工程问题,如静电场和磁场计算。随着科学探索和工程应用的不断进步,对复杂领域问题进行高效数值模拟变得越来越有必要。本文以层次几何树为基础,详细描述了树代码算法的高效实现,用于数值求解定义在一般域上的泊松方程。我们算法的特点包括i) 利用层次几何树,可以高效生成给定元素的邻域和非邻域补丁;ii) 对域的几何形状没有限制,这意味着我们的算法可以应用于一般问题、(\varvec{N}\,\varvec{log}\,{varvec{N}})\)可以很好地观察到,其中\(\varvec{N}\)表示域中的自由度数,并且 iv) 对并行计算非常友好,即.e.,iv) 对并行计算非常友好,即使用 OpenMP 技术可以成功地从数值结果中观察到理想的加速。我们相信,我们的解决方案有可能成为在具有非结构网格的一般域上实现树代码算法的优质候选方案。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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