Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies.

IF 3.2 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Proteins-Structure Function and Bioinformatics Pub Date : 2024-11-01 Epub Date: 2024-07-18 DOI:10.1002/prot.26728
Marcello Miceli, Marco Cannariato, Riccardo Tortarolo, Lorenzo Pallante, Eric A Zizzi, Marco A Deriu
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引用次数: 0

Abstract

Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debilitating condition known as infantile-onset ascending hereditary spastic paralysis (IAHSP). Recent investigations have proposed that mutations within the Alsin MORN domain disrupt proper protein assembly, precluding the formation of the requisite tetrameric configuration essential for the protein's inherent biological activity. However, a comprehensive understanding of the relationship between the biological functions of Alsin and its three-dimensional molecular structure is hindered by the lack of available experimental structures. In this study, we employed and compared several protein structure prediction algorithms to identify a three-dimensional structure for the putative MORN of Alsin. Furthermore, inspired by experimental pieces of evidence from previous studies, we employed the developed models to predict and investigate two homo-dimeric assemblies, characterizing their stability. This study's insights into the three-dimensional structure of the Alsin MORN domain and the stability dynamics of its homo-dimeric assemblies suggest an antiparallel linear configuration stabilized by a noncovalent interaction network.

Alsin MORN 单体和二聚体组装的构象动力学和分子特征。
尽管在真核生物和原核生物的不同物种中,膜占位识别接头(MORN)基序无处不在,但这些蛋白质结构域的特征仍然很不明显。Alsin 蛋白与婴儿期发病的升天型遗传性痉挛性瘫痪(IAHSP)这一令人衰弱的病症有牵连,这就凸显了它们的重要性。最近的研究提出,Alsin MORN 结构域内的突变破坏了蛋白质的正常组装,使其无法形成对蛋白质固有生物活性至关重要的四聚体结构。然而,由于缺乏可用的实验结构,全面了解 Alsin 的生物功能与其三维分子结构之间的关系受到了阻碍。在本研究中,我们采用并比较了几种蛋白质结构预测算法,以确定 Alsin 的推定 MORN 的三维结构。此外,受以往研究中实验证据的启发,我们利用所建立的模型预测和研究了两种同源二聚体的组装,并确定了它们的稳定性。本研究对 Alsin MORN 结构域的三维结构及其同源二聚体组装的稳定性动力学的深入研究表明,一种反平行的线性构型由一个非共价相互作用网络所稳定。
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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
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