COSTA: A Multi-center TOF-MRA Dataset and A Style Self-Consistency Network for Cerebrovascular Segmentation.

Lei Mou, Qifeng Yan, Jinghui Lin, Yifan Zhao, Yonghuai Liu, Shaodong Ma, Jiong Zhang, Wenhao Lv, Tao Zhou, Alejandro F Frangi, Yitian Zhao
{"title":"COSTA: A Multi-center TOF-MRA Dataset and A Style Self-Consistency Network for Cerebrovascular Segmentation.","authors":"Lei Mou, Qifeng Yan, Jinghui Lin, Yifan Zhao, Yonghuai Liu, Shaodong Ma, Jiong Zhang, Wenhao Lv, Tao Zhou, Alejandro F Frangi, Yitian Zhao","doi":"10.1109/TMI.2024.3424976","DOIUrl":null,"url":null,"abstract":"<p><p>Time-of-flight magnetic resonance angiography (TOF-MRA) is the least invasive and ionizing radiation-free approach for cerebrovascular imaging, but variations in imaging artifacts across different clinical centers and imaging vendors result in inter-site and inter-vendor heterogeneity, making its accurate and robust cerebrovascular segmentation challenging. Moreover, the limited availability and quality of annotated data pose further challenges for segmentation methods to generalize well to unseen datasets. In this paper, we construct the largest and most diverse TOF-MRA dataset (COSTA) from 8 individual imaging centers, with all the volumes manually annotated. Then we propose a novel network for cerebrovascular segmentation, namely CESAR, with the ability to tackle feature granularity and image style heterogeneity issues. Specifically, a coarse-to-fine architecture is implemented to refine cerebrovascular segmentation in an iterative manner. An automatic feature selection module is proposed to selectively fuse global long-range dependencies and local contextual information of cerebrovascular structures. A style self-consistency loss is then introduced to explicitly align diverse styles of TOF-MRA images to a standardized one. Extensive experimental results on the COSTA dataset demonstrate the effectiveness of our CESAR network against state-of-the-art methods. We have made 6 subsets of COSTA with the source code online available, in order to promote relevant research in the community.</p>","PeriodicalId":94033,"journal":{"name":"IEEE transactions on medical imaging","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IEEE transactions on medical imaging","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/TMI.2024.3424976","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Time-of-flight magnetic resonance angiography (TOF-MRA) is the least invasive and ionizing radiation-free approach for cerebrovascular imaging, but variations in imaging artifacts across different clinical centers and imaging vendors result in inter-site and inter-vendor heterogeneity, making its accurate and robust cerebrovascular segmentation challenging. Moreover, the limited availability and quality of annotated data pose further challenges for segmentation methods to generalize well to unseen datasets. In this paper, we construct the largest and most diverse TOF-MRA dataset (COSTA) from 8 individual imaging centers, with all the volumes manually annotated. Then we propose a novel network for cerebrovascular segmentation, namely CESAR, with the ability to tackle feature granularity and image style heterogeneity issues. Specifically, a coarse-to-fine architecture is implemented to refine cerebrovascular segmentation in an iterative manner. An automatic feature selection module is proposed to selectively fuse global long-range dependencies and local contextual information of cerebrovascular structures. A style self-consistency loss is then introduced to explicitly align diverse styles of TOF-MRA images to a standardized one. Extensive experimental results on the COSTA dataset demonstrate the effectiveness of our CESAR network against state-of-the-art methods. We have made 6 subsets of COSTA with the source code online available, in order to promote relevant research in the community.

COSTA:用于脑血管分割的多中心 TOF-MRA 数据集和风格自洽性网络。
飞行时间磁共振血管成像(TOF-MRA)是脑血管成像中侵入性最小、无电离辐射的方法,但不同临床中心和成像供应商的成像伪影存在差异,导致了不同临床中心和供应商之间的异质性,使其准确、稳健的脑血管分割具有挑战性。此外,注释数据的可用性和质量有限,也给分割方法在未见过的数据集上良好推广带来了更多挑战。在本文中,我们构建了最大、最多样化的 TOF-MRA 数据集 (COSTA),该数据集来自 8 个独立的成像中心,所有体量均由人工标注。然后,我们提出了一种用于脑血管分割的新型网络,即 CESAR,它能够解决特征粒度和图像风格异质性问题。具体来说,我们采用了一种从粗到细的架构,以迭代的方式完善脑血管分割。提出了一个自动特征选择模块,以有选择性地融合脑血管结构的全局长程依赖性和局部上下文信息。然后引入风格自一致性损失,明确地将不同风格的 TOF-MRA 图像调整为标准化图像。在 COSTA 数据集上的大量实验结果表明,我们的 CESAR 网络与最先进的方法相比非常有效。我们在线提供了 COSTA 的 6 个子集及源代码,以促进社区的相关研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
文献相关原料
公司名称 产品信息 采购帮参考价格
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信