Nils Marquardt, Tobias Hengsbach, Marco Mauritz, Benedikt Wirth, Klaus Schäfers
{"title":"Motion simulation of radio-labeled cells in whole-body positron emission tomography","authors":"Nils Marquardt, Tobias Hengsbach, Marco Mauritz, Benedikt Wirth, Klaus Schäfers","doi":"arxiv-2407.07709","DOIUrl":null,"url":null,"abstract":"Cell tracking is a subject of active research gathering great interest in\nmedicine and biology. Positron emission tomography (PET) is well suited for\ntracking radio-labeled cells in vivo due to its exceptional sensitivity and\nwhole-body capability. For validation, ground-truth data is desirable that\nrealistically mimics the flow of cells in a clinical situation. This study\ndevelops a workflow (CeFloPS) for simulating moving radio-labeled cells in a\nhuman phantom. From the XCAT phantom, the blood vessels are reduced to nodal\nnetworks along which cells can move and distribute to organs and tissues. The\nmovement is directed by the blood flow which is calculated in each node using\nthe Hagen-Poiseuille equation and Kirchhoffs laws assuming laminar flow. Organs\nare voxelized and movement of cells from artery entry to vein exit is generated\nvia a biased 3D random walk. The probabilities of whether cells move or stay in\ntissues are derived from rate constants of physiologically based compartment\nmodeling. PET listmode data is generated using the Monte-Carlo simulation\nframework GATE based on the definition of a large-body PET scanner with cell\npaths as moving radioactive sources and the XCAT phantom providing attenuation\ndata. From the flow simulation of 10000 cells, 100 sample cells were further\nprocessed by GATE and listmode data was reconstructed into images for\ncomparison. As demonstrated by comparisons of simulated and reconstructed cell\ndistributions, CeFloPS can realistically simulate the cell behavior of\nwhole-body PET providing valuable data for development and validation of cell\ntracking algorithms.","PeriodicalId":501378,"journal":{"name":"arXiv - PHYS - Medical Physics","volume":"39 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Medical Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.07709","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Cell tracking is a subject of active research gathering great interest in
medicine and biology. Positron emission tomography (PET) is well suited for
tracking radio-labeled cells in vivo due to its exceptional sensitivity and
whole-body capability. For validation, ground-truth data is desirable that
realistically mimics the flow of cells in a clinical situation. This study
develops a workflow (CeFloPS) for simulating moving radio-labeled cells in a
human phantom. From the XCAT phantom, the blood vessels are reduced to nodal
networks along which cells can move and distribute to organs and tissues. The
movement is directed by the blood flow which is calculated in each node using
the Hagen-Poiseuille equation and Kirchhoffs laws assuming laminar flow. Organs
are voxelized and movement of cells from artery entry to vein exit is generated
via a biased 3D random walk. The probabilities of whether cells move or stay in
tissues are derived from rate constants of physiologically based compartment
modeling. PET listmode data is generated using the Monte-Carlo simulation
framework GATE based on the definition of a large-body PET scanner with cell
paths as moving radioactive sources and the XCAT phantom providing attenuation
data. From the flow simulation of 10000 cells, 100 sample cells were further
processed by GATE and listmode data was reconstructed into images for
comparison. As demonstrated by comparisons of simulated and reconstructed cell
distributions, CeFloPS can realistically simulate the cell behavior of
whole-body PET providing valuable data for development and validation of cell
tracking algorithms.