Emily R. Hayward , Matthias Zeller , Gellert Mezei , L. Van Meervelt (Editor)
{"title":"Chiral versus achiral crystal structures of 4-benzyl-1H-pyrazole and its 3,5-diamino derivative","authors":"Emily R. Hayward , Matthias Zeller , Gellert Mezei , L. Van Meervelt (Editor)","doi":"10.1107/S2056989024006182","DOIUrl":null,"url":null,"abstract":"<div><p>Despite the facile interconversion of its conformers in solution, 4-benzyl-1<em>H</em>-pyrazole adopts a chiral crystal structure (space group <em>P</em>2<sub>1</sub>). Its 3,5-diamino derivative, however, crystallizes in the centrosymmetric space group <em>P</em>2<sub>1</sub>/<em>c</em>. In both crystal structures, the aromatic moieties are organized in alternating bilayers in which they stack in parallel columns in two orthogonal directions, and the pyrazole units form catemer motifs by N—H⋯N and N—H⋯π hydrogen bonding, respectively.</p></div><div><p>The crystal structures of 4-benzyl-1<em>H</em>-pyrazole (C<sub>10</sub>H<sub>10</sub>N<sub>2</sub>, <strong>1</strong>) and 3,5-diamino-4-benzyl-1<em>H</em>-pyrazole (C<sub>10</sub>H<sub>12</sub>N<sub>4</sub>, <strong>2</strong>) were measured at 150 K. Although its different conformers and atropenantiomers easily interconvert in solution by annular tautomerism and/or rotation of the benzyl substituent around the C(pyrazole)—C(CH<sub>2</sub>) single bond (as revealed by <sup>1</sup>H NMR spectroscopy), <strong>1</strong> crystallizes in the non-centrosymmetric space group <em>P</em>2<sub>1</sub>. Within its crystal structure, the pyrazole and phenyl aromatic moieties are organized into alternating bilayers. Both pyrazole and phenyl layers consist of aromatic rings stacked into columns in two orthogonal directions. Within the pyrazole layer, the pyrazole rings form parallel catemers by N—H⋯N hydrogen bonding. Compound <strong>2</strong> adopts a similar bilayer structure, albeit in the centrosymmetric space group <em>P</em>2<sub>1</sub>/<em>c</em>, with pyrazole N—H protons as donors in N—H⋯π hydrogen bonds with neighboring pyrazole rings, and NH<sub>2</sub> protons as donors in N—H⋯N hydrogen bonds with adjacent pyrazoles and other NH<sub>2</sub> moieties. The crystal structures and supramolecular features of <strong>1</strong> and <strong>2</strong> are contrasted with the two known structures of their analogs, 3,5-dimethyl-4-benzyl-1<em>H</em>-pyrazole and 3,5-diphenyl-4-benzyl-1<em>H</em>-pyrazole.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 800-805"},"PeriodicalIF":0.5000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223692/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section E: Crystallographic Communications","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2056989024001427","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CRYSTALLOGRAPHY","Score":null,"Total":0}
引用次数: 0
Abstract
Despite the facile interconversion of its conformers in solution, 4-benzyl-1H-pyrazole adopts a chiral crystal structure (space group P21). Its 3,5-diamino derivative, however, crystallizes in the centrosymmetric space group P21/c. In both crystal structures, the aromatic moieties are organized in alternating bilayers in which they stack in parallel columns in two orthogonal directions, and the pyrazole units form catemer motifs by N—H⋯N and N—H⋯π hydrogen bonding, respectively.
The crystal structures of 4-benzyl-1H-pyrazole (C10H10N2, 1) and 3,5-diamino-4-benzyl-1H-pyrazole (C10H12N4, 2) were measured at 150 K. Although its different conformers and atropenantiomers easily interconvert in solution by annular tautomerism and/or rotation of the benzyl substituent around the C(pyrazole)—C(CH2) single bond (as revealed by 1H NMR spectroscopy), 1 crystallizes in the non-centrosymmetric space group P21. Within its crystal structure, the pyrazole and phenyl aromatic moieties are organized into alternating bilayers. Both pyrazole and phenyl layers consist of aromatic rings stacked into columns in two orthogonal directions. Within the pyrazole layer, the pyrazole rings form parallel catemers by N—H⋯N hydrogen bonding. Compound 2 adopts a similar bilayer structure, albeit in the centrosymmetric space group P21/c, with pyrazole N—H protons as donors in N—H⋯π hydrogen bonds with neighboring pyrazole rings, and NH2 protons as donors in N—H⋯N hydrogen bonds with adjacent pyrazoles and other NH2 moieties. The crystal structures and supramolecular features of 1 and 2 are contrasted with the two known structures of their analogs, 3,5-dimethyl-4-benzyl-1H-pyrazole and 3,5-diphenyl-4-benzyl-1H-pyrazole.
期刊介绍:
Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.