High-throughput evaluation of hemolytic activity through precise measurement of colony and hemolytic zone sizes of engineered Bacillus subtilis on blood agar.

IF 2.5 Q3 BIOCHEMICAL RESEARCH METHODS
Biology Methods and Protocols Pub Date : 2024-06-27 eCollection Date: 2024-01-01 DOI:10.1093/biomethods/bpae044
Takahiro Bamba, Rina Aoki, Yoshimi Hori, Shu Ishikawa, Ken-Ichi Yoshida, Naoaki Taoka, Shingo Kobayashi, Hisashi Yasueda, Akihiko Kondo, Tomohisa Hasunuma
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Abstract

Biosurfactants have remarkable characteristics, such as environmental friendliness, high safety, and excellent biodegradability. Surfactin is one of the best-known biosurfactants produced by Bacillus subtilis. Because the biosynthetic pathways of biosurfactants, such as surfactin, are complex, mutagenesis is a useful alternative to typical metabolic engineering approaches for developing high-yield strains. Therefore, there is a need for high-throughput and accurate screening methods for high-yield strains derived from mutant libraries. The blood agar lysis method, which takes advantage of the hemolytic activity of biosurfactants, is one way of determining their concentration. This method includes inoculating microbial cells onto blood-containing agar plates, and biosurfactant production is assessed based on the size of the hemolytic zone formed around each colony. Challenges with the blood agar lysis method include low experimental reproducibility and a lack of established protocols for high-throughput screening. Therefore, in this study, we investigated the effects of the inoculation procedure and media composition on the formation of hemolytic zones. We also developed a workflow to evaluate the number of colonies using robotics. The results revealed that by arranging colonies at appropriate intervals and measuring the areas of colonies and hemolytic rings using image analysis software, it was possible to accurately compare the hemolytic activity among several colonies. Although the use of the blood agar lysis method for screening is limited to surfactants exhibiting hemolytic activity, it is believed that by considering the insights gained from this study, it can contribute to the accurate screening of strains with high productivity.

通过精确测量血琼脂上工程枯草芽孢杆菌的菌落和溶血区大小,高通量评估溶血活性。
生物表面活性剂具有环境友好、安全性高、生物降解性好等显著特点。表面活性剂是由枯草芽孢杆菌产生的最著名的生物表面活性剂之一。由于表面活性剂等生物表面活性剂的生物合成途径十分复杂,因此,在开发高产菌株时,诱变是典型的代谢工程方法之外的一种有效替代方法。因此,需要高通量和精确的筛选方法来筛选突变体库中的高产菌株。血液琼脂裂解法利用了生物表面活性剂的溶血活性,是确定生物表面活性剂浓度的一种方法。这种方法包括将微生物细胞接种到含血琼脂平板上,然后根据每个菌落周围形成的溶血区的大小来评估生物表面活性剂的产量。血液琼脂溶解法面临的挑战包括实验可重复性低和缺乏用于高通量筛选的成熟方案。因此,在本研究中,我们研究了接种程序和培养基成分对溶血区形成的影响。我们还开发了一套工作流程,利用机器人技术评估菌落数量。结果表明,将菌落按适当的间隔排列,并使用图像分析软件测量菌落和溶血环的面积,就能准确比较多个菌落之间的溶血活性。虽然使用血液琼脂裂解法进行筛选仅限于具有溶血活性的表面活性剂,但通过考虑本研究获得的启示,相信有助于准确筛选具有高生产率的菌株。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biology Methods and Protocols
Biology Methods and Protocols Agricultural and Biological Sciences-Agricultural and Biological Sciences (all)
CiteScore
3.80
自引率
2.80%
发文量
28
审稿时长
19 weeks
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