Quantum mechanical-based strategies in drug discovery: Finding the pace to new challenges in drug design

IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Tiziana Ginex , Javier Vázquez , Carolina Estarellas , F.Javier Luque
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引用次数: 0

Abstract

The expansion of the chemical space to tangible libraries containing billions of synthesizable molecules opens exciting opportunities for drug discovery, but also challenges the power of computer-aided drug design to prioritize the best candidates. This directly hits quantum mechanics (QM) methods, which provide chemically accurate properties, but subject to small-sized systems. Preserving accuracy while optimizing the computational cost is at the heart of many efforts to develop high-quality, efficient QM-based strategies, reflected in refined algorithms and computational approaches. The design of QM-tailored physics-based force fields and the coupling of QM with machine learning, in conjunction with the computing performance of supercomputing resources, will enhance the ability to use these methods in drug discovery. The challenge is formidable, but we will undoubtedly see impressive advances that will define a new era.

Abstract Image

基于量子力学的药物发现策略:找到应对药物设计新挑战的步伐
化学空间扩展到包含数十亿可合成分子的有形库,为药物发现带来了令人兴奋的机遇,但同时也对计算机辅助药物设计优先选择最佳候选药物的能力提出了挑战。这直接冲击了量子力学(QM)方法,该方法可提供精确的化学特性,但受制于小尺寸系统。在优化计算成本的同时保持准确性,是许多人努力开发基于量子力学的高质量、高效策略的核心,这体现在完善的算法和计算方法上。设计基于QM的物理力场以及将QM与机器学习结合起来,再加上超级计算资源的计算性能,将提高在药物发现中使用这些方法的能力。挑战是艰巨的,但我们无疑会看到令人印象深刻的进步,这将定义一个新的时代。
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来源期刊
Current opinion in structural biology
Current opinion in structural biology 生物-生化与分子生物学
CiteScore
12.20
自引率
2.90%
发文量
179
审稿时长
6-12 weeks
期刊介绍: Current Opinion in Structural Biology (COSB) aims to stimulate scientifically grounded, interdisciplinary, multi-scale debate and exchange of ideas. It contains polished, concise and timely reviews and opinions, with particular emphasis on those articles published in the past two years. In addition to describing recent trends, the authors are encouraged to give their subjective opinion of the topics discussed. In COSB, we help the reader by providing in a systematic manner: 1. The views of experts on current advances in their field in a clear and readable form. 2. Evaluations of the most interesting papers, annotated by experts, from the great wealth of original publications. [...] The subject of Structural Biology is divided into twelve themed sections, each of which is reviewed once a year. Each issue contains two sections, and the amount of space devoted to each section is related to its importance. -Folding and Binding- Nucleic acids and their protein complexes- Macromolecular Machines- Theory and Simulation- Sequences and Topology- New constructs and expression of proteins- Membranes- Engineering and Design- Carbohydrate-protein interactions and glycosylation- Biophysical and molecular biological methods- Multi-protein assemblies in signalling- Catalysis and Regulation
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