A model of time-dependent macromolecular and elemental composition of phytoplankton

IF 1.9 4区 数学 Q2 BIOLOGY
Anne Willem Omta , Justin D. Liefer , Zoe V. Finkel , Andrew J. Irwin , Daniel Sher , Michael J. Follows
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引用次数: 0

Abstract

Phytoplankton Chl:C:N:P ratios are important from both an ecological and a biogeochemical perspective. We show that these elemental ratios can be represented by a phytoplankton physiological model of low complexity that includes major cellular macromolecular pools. In particular, our model resolves time-dependent intracellular pools of chlorophyll, proteins, nucleic acids, carbohydrates/lipids, and N and P storage. Batch culture data for two diatom and two prasinophyte species are used to constrain parameters that represent specific allocation traits and strategies. A key novelty is the simultaneous estimation of physiological parameters for two phytoplankton groups of such different sizes. The number of free parameters is reduced by assuming (i) allometric scaling for maximum uptake rates, (ii) shared half-saturation constants for synthesis of functional macromolecules, (iii) shared exudation rates of functional macromolecules across the species. The rationale behind this assumption is that across the different species, the same or similar processes, enzymes, and metabolites play a role in key physiological processes. For the turnover numbers of macromolecular synthesis and storage exudation rates, differences between diatoms and prasinophytes need to be taken into account to obtain a good fit. Our model fits suggest that the parameters related to storage dynamics dominate the differences in the C:N:P ratios between the different phytoplankton groups. Since descriptions of storage dynamics are still incomplete and imprecise, predictions of C:N:P ratios by phytoplankton models likely have a large uncertainty.

浮游植物大分子和元素组成随时间变化的模型。
从生态学和生物地球化学的角度来看,浮游植物的 Chl:C:N:P 比例都很重要。我们的研究表明,浮游植物生理模型的复杂程度较低,包括了主要的细胞大分子池,可以代表这些元素比例。特别是,我们的模型解决了随时间变化的叶绿素、蛋白质、核酸、碳水化合物/脂类以及氮和磷储存的细胞内池问题。两个硅藻和两个原生植物物种的批量培养数据被用来约束代表特定分配特征和策略的参数。一个重要的新颖之处在于同时估算了两个大小不同的浮游植物群体的生理参数。通过以下假设减少了自由参数的数量:(i) 最大吸收率的异速比例;(ii) 合成功能性大分子的共享半饱和常数;(iii) 各物种共享功能性大分子的渗出率。这一假设的基本原理是,在不同物种中,相同或相似的过程、酶和代谢物在关键生理过程中发挥作用。对于大分子合成和储存渗出速率的周转次数,需要考虑硅藻和原生植物之间的差异,以获得良好的拟合效果。我们的模型拟合结果表明,与贮存动力学有关的参数主导了不同浮游植物群之间 C:N:P 比例的差异。由于对贮存动力学的描述还不完整、不精确,浮游植物模型对 C:N:P 比率的预测可能存在很大的不确定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
4.20
自引率
5.00%
发文量
218
审稿时长
51 days
期刊介绍: The Journal of Theoretical Biology is the leading forum for theoretical perspectives that give insight into biological processes. It covers a very wide range of topics and is of interest to biologists in many areas of research, including: • Brain and Neuroscience • Cancer Growth and Treatment • Cell Biology • Developmental Biology • Ecology • Evolution • Immunology, • Infectious and non-infectious Diseases, • Mathematical, Computational, Biophysical and Statistical Modeling • Microbiology, Molecular Biology, and Biochemistry • Networks and Complex Systems • Physiology • Pharmacodynamics • Animal Behavior and Game Theory Acceptable papers are those that bear significant importance on the biology per se being presented, and not on the mathematical analysis. Papers that include some data or experimental material bearing on theory will be considered, including those that contain comparative study, statistical data analysis, mathematical proof, computer simulations, experiments, field observations, or even philosophical arguments, which are all methods to support or reject theoretical ideas. However, there should be a concerted effort to make papers intelligible to biologists in the chosen field.
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