Representing Zooplankters: An Example from the Foraminifera

George H. Scott
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Abstract

Because of their excellent preservation record, testate zooplankters provide valuable proxy ocean climate data through the Quaternary–Recent. Commonly, specimen abundances are sought, which are time-consuming to collect manually and require taxonomic expertise. While machine learning models obviate these problems, it is questioned whether the current use of specimens selected by experts to train the models impartially captures the variation within the source populations. To illustrate the potential value of the latter and their relevance to the selection of representative specimens, the 2D outline shape of the planktonic foraminifer Truncorotalia crassaformis from four globally distributed, late-Quaternary–modern collections is examined. Large intra-sample variation is attributed to changes in the size and shape of the last-formed chamber, which often departs radically from its predecessors. Similar outlines occur in each collection, and no single axial shape is dominant when the aggregated data, aligned on their centroids and adjusted for size and position, are projected onto their principal components. Several partitions based on distance from the centroid of the standardized data are considered as sources of representative specimens, with that at ±1.645σ (standard deviations, nominally 90%) suggested as suitable. This procedure obviates the need for expert-based consensus sampling; for greater environmental resolution, it can be applied to individual water mass samples. It assists, but does not fully resolve, the following basic diagnostic question: which characters separate Truncorotalia crassaformis from its relatives?
代表浮游动物:有孔虫的一个例子
睾丸浮游动物保存完好,可提供第四纪近期海洋气候的宝贵替代数据。通常情况下,需要寻找标本丰度,而人工收集标本非常耗时,并且需要分类学方面的专业知识。虽然机器学习模型避免了这些问题,但目前使用专家挑选的标本来训练模型是否能公正地捕捉到源种群内部的变化还存在疑问。为了说明后者的潜在价值及其与代表性标本选择的相关性,我们研究了来自四个全球分布的第四纪晚期现代采集物的浮游有孔虫 Truncorotalia crassaformis 的二维轮廓形状。样本内部的巨大差异归因于最后形成的腔室的大小和形状的变化,这些腔室往往与之前的腔室截然不同。每个样本中都有类似的轮廓,而当以其中心点为基准并根据大小和位置进行调整后,将汇总数据投影到其主成分上时,并没有单一的轴向形状占主导地位。基于标准化数据中心点距离的几个分区被认为是代表性标本的来源,其中±1.645σ(标准偏差,名义上为 90%)的分区被认为是合适的。这一程序避免了基于专家共识的取样;为提高环境分辨率,可将其应用于单个水体样本。它有助于但并不能完全解决以下基本诊断问题:哪些特征可将 Truncorotalia crassaformis 与其近亲区分开来?
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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