Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk
{"title":"Image-based recognition of parasitoid wasps using advanced neural networks.","authors":"Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk","doi":"10.1071/IS24011","DOIUrl":null,"url":null,"abstract":"<p><p>Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.</p>","PeriodicalId":54927,"journal":{"name":"Invertebrate Systematics","volume":"38 ","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Invertebrate Systematics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1071/IS24011","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.
期刊介绍:
Invertebrate Systematics (formerly known as Invertebrate Taxonomy) is an international journal publishing original and significant contributions on the systematics, phylogeny and biogeography of all invertebrate taxa. Articles in the journal provide comprehensive treatments of clearly defined taxonomic groups, often emphasising their biodiversity patterns and/or biological aspects. The journal also includes contributions on the systematics of selected species that are of particular conservation, economic, medical or veterinary importance.
Invertebrate Systematics is a vital resource globally for scientists, students, conservation biologists, environmental consultants and government policy advisors who are interested in terrestrial, freshwater and marine systems.
Invertebrate Systematics is published with the endorsement of the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the Australian Academy of Science.