{"title":"PseudoCell: Hard Negative Mining as Pseudo Labeling for Deep Learning-Based Centroblast Cell Detection","authors":"Narongrid Seesawad;Piyalitt Ittichaiwong;Thapanun Sudhawiyangkul;Phattarapong Sawangjai;Peti Thuwajit;Paisarn Boonsakan;Supasan Sripodok;Kanyakorn Veerakanjana;Komgrid Charngkaew;Ananya Pongpaibul;Napat Angkathunyakul;Narit Hnoohom;Sumeth Yuenyong;Chanitra Thuwajit;Theerawit Wilaiprasitporn","doi":"10.1109/OJEMB.2024.3407351","DOIUrl":null,"url":null,"abstract":"<italic>Background:</i>\n Deep learning models for patch classification in whole-slide images (WSIs) have shown promise in assisting follicular lymphoma grading. However, these models often require pathologists to identify centroblasts and manually provide refined labels for model optimization. \n<italic>Objective:</i>\n To address this limitation, we propose \n<italic>PseudoCell</i>\n, an object detection framework for automated centroblast detection in WSI, eliminating the need for extensive pathologist's refined labels. \n<italic>Methods:</i>\n \n<italic>PseudoCell</i>\n leverages a combination of pathologist-provided centroblast labels and pseudo-negative labels generated from undersampled false-positive predictions based on cell morphology features. This approach reduces the reliance on time-consuming manual annotations. \n<italic>Results:</i>\n Our framework significantly reduces the workload for pathologists by accurately identifying and narrowing down areas of interest containing centroblasts. Depending on the confidence threshold, \n<italic>PseudoCell</i>\n can eliminate 58.18-99.35% of irrelevant tissue areas on WSI, streamlining the diagnostic process. \n<italic>Conclusion:</i>\n This study presents \n<italic>PseudoCell</i>\n as a practical and efficient prescreening method for centroblast detection, eliminating the need for refined labels from pathologists. The discussion section provides detailed guidance for implementing \n<italic>PseudoCell</i>\n in clinical practice.","PeriodicalId":33825,"journal":{"name":"IEEE Open Journal of Engineering in Medicine and Biology","volume":"5 ","pages":"514-523"},"PeriodicalIF":2.7000,"publicationDate":"2024-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10542389","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IEEE Open Journal of Engineering in Medicine and Biology","FirstCategoryId":"1085","ListUrlMain":"https://ieeexplore.ieee.org/document/10542389/","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Background:
Deep learning models for patch classification in whole-slide images (WSIs) have shown promise in assisting follicular lymphoma grading. However, these models often require pathologists to identify centroblasts and manually provide refined labels for model optimization.
Objective:
To address this limitation, we propose
PseudoCell
, an object detection framework for automated centroblast detection in WSI, eliminating the need for extensive pathologist's refined labels.
Methods:
PseudoCell
leverages a combination of pathologist-provided centroblast labels and pseudo-negative labels generated from undersampled false-positive predictions based on cell morphology features. This approach reduces the reliance on time-consuming manual annotations.
Results:
Our framework significantly reduces the workload for pathologists by accurately identifying and narrowing down areas of interest containing centroblasts. Depending on the confidence threshold,
PseudoCell
can eliminate 58.18-99.35% of irrelevant tissue areas on WSI, streamlining the diagnostic process.
Conclusion:
This study presents
PseudoCell
as a practical and efficient prescreening method for centroblast detection, eliminating the need for refined labels from pathologists. The discussion section provides detailed guidance for implementing
PseudoCell
in clinical practice.
背景:用于全切片图像(WSI)斑块分类的深度学习模型在辅助滤泡性淋巴瘤分级方面大有可为。然而,这些模型通常需要病理学家识别中心母细胞,并手动提供用于模型优化的精细标签。目的:为了解决这一局限性,我们提出了一个对象检测框架--PseudoCell,用于自动检测 WSI 中的成中心细胞,无需病理学家提供大量的精细标签。方法PseudoCell 综合利用了病理学家提供的中心母细胞标签和根据细胞形态特征从采样不足的假阳性预测中生成的伪阴性标签。这种方法减少了对耗时的人工注释的依赖。结果我们的框架能准确识别并缩小含有中心母细胞的感兴趣区,从而大大减轻了病理学家的工作量。根据置信度阈值的不同,PseudoCell 可以消除 WSI 上 58.18-99.35% 的无关组织区域,从而简化诊断过程。结论本研究提出的伪细胞是一种实用、高效的成中心细胞检测预筛选方法,无需病理学家进行精细标记。讨论部分为在临床实践中使用伪细胞提供了详细指导。
期刊介绍:
The IEEE Open Journal of Engineering in Medicine and Biology (IEEE OJEMB) is dedicated to serving the community of innovators in medicine, technology, and the sciences, with the core goal of advancing the highest-quality interdisciplinary research between these disciplines. The journal firmly believes that the future of medicine depends on close collaboration between biology and technology, and that fostering interaction between these fields is an important way to advance key discoveries that can improve clinical care.IEEE OJEMB is a gold open access journal in which the authors retain the copyright to their papers and readers have free access to the full text and PDFs on the IEEE Xplore® Digital Library. However, authors are required to pay an article processing fee at the time their paper is accepted for publication, using to cover the cost of publication.