Knowledge enhanced attention aggregation network for medicine recommendation

IF 2.6 4区 生物学 Q2 BIOLOGY
Jiedong Wei , Yijia Zhang , Xingwang Li , Mingyu Lu , Hongfei Lin
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Abstract

The combination of deep learning and the medical field has recently achieved great success, particularly in recommending medicine for patients. However, patients’ clinical records often contain repeated medical information that can significantly impact their health condition. Most existing methods for modeling longitudinal patient information overlook the impact of individual diagnoses and procedures on the patient’s health, resulting in insufficient patient representation and limited accuracy of medicine recommendations. Therefore, we propose a medicine recommendation model called KEAN, which is based on an attention aggregation network and enhanced graph convolution. Specifically, KEAN can aggregate individual diagnoses and procedures in patient visits to capture significant features that affect patients’ diseases. We further incorporate medicine knowledge from complex medicine combinations, reduce drug–drug interactions (DDIs), and recommend medicines that are beneficial to patients’ health. The experimental results on the MIMIC-III dataset demonstrate that our model outperforms existing advanced methods, which highlights the effectiveness of the proposed method.

Abstract Image

用于药品推荐的知识增强型注意力聚合网络
最近,深度学习与医疗领域的结合取得了巨大成功,尤其是在为患者推荐药物方面。然而,患者的临床记录往往包含重复的医疗信息,这些信息会对患者的健康状况产生重大影响。现有的大多数患者纵向信息建模方法都忽略了单个诊断和手术对患者健康的影响,导致患者代表性不足,药品推荐的准确性有限。因此,我们提出了基于注意力聚合网络和增强图卷积的医药推荐模型 KEAN。具体来说,KEAN 可以聚合患者就诊时的单个诊断和治疗过程,从而捕捉影响患者疾病的重要特征。我们还进一步从复杂的药物组合中纳入药物知识,减少药物间的相互作用(DDI),并推荐对患者健康有益的药物。在 MIMIC-III 数据集上的实验结果表明,我们的模型优于现有的先进方法,这凸显了所提方法的有效性。
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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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