A comparative study of pre-processing methods to improve glioma segmentation performance in brain MRI using deep learning

Abstract

Background: Glioma is the most common brain tumor in adult patients and requires accurate treatment. The delineation of tumor boundaries must be accurate and precise, which is crucial for treatment planning. Currently, delineating boundaries for tumors is a tedious, time-consuming task and may be prone to human error among oncologists. Therefore, artificial intelligence plays a vital role in reducing these problems. Objective: This study aims to find a relationship between improving image enhancement and evaluating the performance of deep learning models for segmenting glioma image data on brain MRI images. Materials and methods: The BraTs2023 dataset was used in this study. The image dataset was converted from three dimensions to two dimensions and then subjected to pre-processing via four image enhancement techniques, including contrast-limited adaptive histogram equalization (CLAHE), gamma correction (GC), non-local mean filter (NLMF), and median and Wiener filter (MWF). Subsequently, it was evaluated for structural similarity index (SSIM) and mean squared error. The deep learning segmentation model was created using the U-Net architecture and assessed for dice similarity coefficient (DSC), accuracy, precision, recall, F1-score, and Jaccard index for tumor segmentation. Results: The performance of enhanced image results for CLAHE, GC, NLMF, and MWF techniques shows SSIM values of 0.912, 0.905, 0.999, and 0.911, respectively. The dice similarity coefficient (DSC) for segmentation without image enhancement was 0.817. The DSC of segmentation for CLAHE, GC, NLMF, and MWF techniques were 0.818, 0.812, 0.820, and 0.797, respectively. Conclusion: The enhanced image technique could affect the performance of tumor segmentation. by the enhanced image for use in a trained model may increase or decrease performance depending on the chosen image enhancement technique and the parameters determined by each method.