Non-invasive monitoring of microalgae cultivations using hyperspectral imager

IF 2.8 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Salli Pääkkönen, Ilkka Pölönen, Anna-Maria Raita-Hakola, Mariana Carneiro, Helena Cardoso, Dinis Mauricio, Alexandre Miguel Cavaco Rodrigues, Pauliina Salmi
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Abstract

High expectations are placed on microalgae as a sustainable source of valuable biomolecules. Robust methods to control microalgae cultivation processes are needed to enhance their efficiency and, thereafter, increase the profitability of microalgae-based products. To meet this need, a non-invasive monitoring method based on a hyperspectral imager was developed for laboratory scale and afterwards tested on industrial scale cultivations. In the laboratory experiments, reference data for microalgal biomass concentration was gathered to construct 1) a vegetation index-based linear regression model and 2) a one-dimensional convolutional neural network model to resolve microalgae biomass concentration from the spectral images. The two modelling approaches were compared. The mean absolute percentage error (MAPE) for the index-based model was 15–24%, with the standard deviation (SD) of 13-18 for the different species. MAPE for the convolutional neural network was 11–26% (SD = 10–22). Both models predicted the biomass well. The convolutional neural network could also classify the monocultures of green algae by species (accuracy of 97–99%). The index-based model was fast to construct and easy to interpret. The index-based monitoring was also tested in an industrial setup demonstrating a promising ability to retrieve microalgae-biomass-based signals in different cultivation systems.

Abstract Image

利用高光谱成像仪对微藻类种植进行非侵入式监测
人们对微藻类作为宝贵生物分子的可持续来源寄予厚望。为了提高微藻培养过程的效率,进而提高微藻产品的盈利能力,需要有可靠的方法来控制微藻培养过程。为了满足这一需求,我们开发了一种基于高光谱成像仪的非侵入式监测方法,用于实验室规模的实验,随后在工业规模的培养过程中进行了测试。在实验室实验中,收集了微藻生物量浓度的参考数据,以构建 1) 基于植被指数的线性回归模型和 2) 一维卷积神经网络模型,从而从光谱图像中解析微藻生物量浓度。对这两种建模方法进行了比较。基于指数的模型的平均绝对百分比误差(MAPE)为 15-24%,不同物种的标准偏差(SD)为 13-18%。卷积神经网络的平均绝对误差为 11-26%(标准差 = 10-22)。两个模型都能很好地预测生物量。卷积神经网络还能按物种对单株绿藻进行分类(准确率为 97-99%)。基于指数的模型构建快速,易于解释。基于指数的监测方法还在工业装置中进行了测试,结果表明它有能力在不同的培养系统中检索基于微藻生物量的信号。
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来源期刊
Journal of Applied Phycology
Journal of Applied Phycology 生物-海洋与淡水生物学
CiteScore
6.80
自引率
9.10%
发文量
212
审稿时长
2.8 months
期刊介绍: The Journal of Applied Phycology publishes work on the rapidly expanding subject of the commercial use of algae. The journal accepts submissions on fundamental research, development of techniques and practical applications in such areas as algal and cyanobacterial biotechnology and genetic engineering, tissues culture, culture collections, commercially useful micro-algae and their products, mariculture, algalization and soil fertility, pollution and fouling, monitoring, toxicity tests, toxic compounds, antibiotics and other biologically active compounds. Each issue of the Journal of Applied Phycology also includes a short section for brief notes and general information on new products, patents and company news.
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