Identification of miR-20a as A Potential Discerning Biomarker for Non-Invasive versus Invasive Retinoblastoma.

IF 1.7 4区 生物学 Q4 CELL BIOLOGY
Ahmad Bereimipour, Saeed Karimi, Mohammad Faranoush, Amir Abbas Hedayati Asl, Monireh Sadat Miri, Leila Satarian, Sara Taleahmad
{"title":"Identification of miR-20a as A Potential Discerning Biomarker for Non-Invasive versus Invasive Retinoblastoma.","authors":"Ahmad Bereimipour, Saeed Karimi, Mohammad Faranoush, Amir Abbas Hedayati Asl, Monireh Sadat Miri, Leila Satarian, Sara Taleahmad","doi":"10.22074/cellj.2024.2019336.1479","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Intraocular retinoblastoma (RB) is common in kids. Although the cause of this disease is a mutation in the RB1 gene, the formed cancerous mass in different patients is seen in non-invasive states, limited to the ocular cavity or in invasive states distributed to other parts of the body. Because this tumor's aggressiveness cannot be predicted early, these patients receive systemic chemotherapy with multiple drugs. Treating non-invasive and invasive tumors separately reduces chemical drug side effects. The aim of this study was to identify diagnostic biomarkers by separating miRNAs in blood serum from invasive and non-invasive RB patients.</p><p><strong>Materials and methods: </strong>In this experimental study, selected three gene expression omnibus (GEO) datasets. Two were related to serum and tumor tissue miRNAs, and one was related to non-invasive and invasive <i>RB</i> gene expression. Examined <i>RB</i> gene-miRNA relationships. Then, we performed real-time polymerase chain reaction (PCR) on candidate miRNAs in the Y79 cell line and patient blood samples in non-invasive and invasive retinoblastoma.</p><p><strong>Results: </strong>Fourteen high-expression and 7 low-expression miRNAs resulted. <i>MiR-181, miR-135a, miR-20a, miR-373,</i> and <i>miR-191</i> were common genes with differential genes between invasive and non-invasive retinoblastoma. Only <i>MiR-181</i> was upregulated in the Y79 RB cell line. Other candidate miRNAs expressed less. Invasive retinoblastomas increased serum miR-20a and miR-191.</p><p><strong>Conclusion: </strong>Integrated and regular bioinformatics analyses found important miRNAs in patients' and <i>miR-20a, miR- 191</i>, and <i>miR-135a</i> can distinguish non-invasive and invasive retinoblastoma, suggesting further research.</p>","PeriodicalId":49224,"journal":{"name":"Cell Journal","volume":"26 4","pages":"250-258"},"PeriodicalIF":1.7000,"publicationDate":"2024-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Cell Journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.22074/cellj.2024.2019336.1479","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CELL BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Objective: Intraocular retinoblastoma (RB) is common in kids. Although the cause of this disease is a mutation in the RB1 gene, the formed cancerous mass in different patients is seen in non-invasive states, limited to the ocular cavity or in invasive states distributed to other parts of the body. Because this tumor's aggressiveness cannot be predicted early, these patients receive systemic chemotherapy with multiple drugs. Treating non-invasive and invasive tumors separately reduces chemical drug side effects. The aim of this study was to identify diagnostic biomarkers by separating miRNAs in blood serum from invasive and non-invasive RB patients.

Materials and methods: In this experimental study, selected three gene expression omnibus (GEO) datasets. Two were related to serum and tumor tissue miRNAs, and one was related to non-invasive and invasive RB gene expression. Examined RB gene-miRNA relationships. Then, we performed real-time polymerase chain reaction (PCR) on candidate miRNAs in the Y79 cell line and patient blood samples in non-invasive and invasive retinoblastoma.

Results: Fourteen high-expression and 7 low-expression miRNAs resulted. MiR-181, miR-135a, miR-20a, miR-373, and miR-191 were common genes with differential genes between invasive and non-invasive retinoblastoma. Only MiR-181 was upregulated in the Y79 RB cell line. Other candidate miRNAs expressed less. Invasive retinoblastomas increased serum miR-20a and miR-191.

Conclusion: Integrated and regular bioinformatics analyses found important miRNAs in patients' and miR-20a, miR- 191, and miR-135a can distinguish non-invasive and invasive retinoblastoma, suggesting further research.

鉴定 miR-20a 作为鉴别非侵袭性与侵袭性视网膜母细胞瘤的潜在生物标记物
目的:眼内视网膜母细胞瘤(RB)在儿童中很常见。虽然这种疾病的病因是 RB1 基因突变,但在不同患者身上形成的癌肿有局限于眼腔的非侵袭性状态,也有分布于身体其他部位的侵袭性状态。由于无法早期预测这种肿瘤的侵袭性,这些患者需要接受多种药物的全身化疗。将非浸润性肿瘤和浸润性肿瘤分开治疗可减少化学药物的副作用。本研究的目的是通过分离浸润性和非浸润性 RB 患者血清中的 miRNAs 来确定诊断生物标志物:在这项实验研究中,选择了三个基因表达总集(GEO)数据集。两个数据集与血清和肿瘤组织 miRNA 相关,一个数据集与非浸润性和浸润性 RB 基因表达相关。研究 RB 基因与 miRNA 的关系。然后,我们对非侵袭性和侵袭性视网膜母细胞瘤 Y79 细胞系和患者血液样本中的候选 miRNA 进行了实时聚合酶链反应(PCR):结果:共检测出14个高表达和7个低表达的miRNA。MiR-181、miR-135a、miR-20a、miR-373和miR-191是侵袭性和非侵袭性视网膜母细胞瘤的常见基因和差异基因。只有 MiR-181 在 Y79 RB 细胞系中上调。其他候选 miRNA 的表达较少。浸润性视网膜母细胞瘤增加了血清中的 miR-20a 和 miR-191:综合和常规生物信息学分析发现了患者体内的重要 miRNA,而 miR-20a、miR-191 和 miR-135a 可以区分非浸润性和浸润性视网膜母细胞瘤,建议进一步研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Cell Journal
Cell Journal CELL BIOLOGY-
CiteScore
3.40
自引率
5.00%
发文量
0
审稿时长
12 months
期刊介绍: The “Cell Journal (Yakhteh)“, formerly published as “Yakhteh Medical Journal”, is a quarterly English publication of Royan Institute. This journal focuses on topics relevant to cellular and molecular scientific areas, besides other related fields. The Cell J has been certified by Ministry of Culture and Islamic Guidance in 1999 and was accredited as a scientific and research journal by HBI (Health and Biomedical Information) Journal Accreditation Commission in 2000 which is an open access journal.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信