The complete chloroplast genome of Durio zibethinus L. cultivar Ri6 (Helicteroideae, Malvaceae).

Pub Date : 2024-05-08 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2350619
Tran Gia Huy, Nguyen Pham Anh Thi, Hoang Dang Khoa Do, Do Tan Khang
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Abstract

Durian, a member of the Malvaceae family, is famous for its delicious fruits, which have strong scents and are rich in nutrients. In this study, we sequenced and characterized the complete chloroplast genome of Durio zibethinus L. 1774 cultivar Ri6, a popular durian cultivar in Vietnam, using the Illumina Hiseq platform. The results showed a circular chloroplast genome composed of a large single copy of 96,115 bp, a small single copy of 20,819 bp, and two inverted repeat regions of 24,185 bp. This genome consisted of 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The overall GC content of this genome was 35.7%. Phylogenetic analysis inferred from 78 protein-coding regions revealed monophyly of Durio species and a close relationship between D. zibethinus cultivar Ri6 and cultivar Mongthong. This study provides essential information for further studies examining genetic population, breedings, and species identification among Durio taxa and cultivars.

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Durio zibethinus L. 栽培品种 Ri6(马鞭草科 Helicteroideae)的完整叶绿体基因组。
榴莲是锦葵科植物,因其果实美味可口、香味浓郁、营养丰富而闻名。本研究利用 Illumina Hiseq 平台对越南流行的榴莲栽培品种 Durio zibethinus L. 1774 栽培品种 Ri6 的叶绿体基因组进行了测序和鉴定。结果表明,叶绿体基因组是一个环状的,由一个 96,115 bp 的大单个拷贝、一个 20,819 bp 的小单个拷贝和两个 24,185 bp 的倒位重复区组成。该基因组由 79 个蛋白质编码基因、30 个转移 RNA 基因和 4 个核糖体 RNA 基因组成。该基因组的总 GC 含量为 35.7%。根据 78 个蛋白编码区推断的系统进化分析表明,Durio 种为单系,D. zibethinus 栽培品种 Ri6 与栽培品种 Mongthong 关系密切。这项研究为进一步研究 Durio 类群和栽培品种之间的遗传种群、育种和物种鉴定提供了重要信息。
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