SleepBoost: a multi-level tree-based ensemble model for automatic sleep stage classification.

IF 2.6 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Akib Zaman, Shiu Kumar, Swakkhar Shatabda, Iman Dehzangi, Alok Sharma
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Abstract

Neurodegenerative diseases often exhibit a strong link with sleep disruption, highlighting the importance of effective sleep stage monitoring. In this light, automatic sleep stage classification (ASSC) plays a pivotal role, now more streamlined than ever due to the advancements in deep learning (DL). However, the opaque nature of DL models can be a barrier in their clinical adoption, due to trust concerns among medical practitioners. To bridge this gap, we introduce SleepBoost, a transparent multi-level tree-based ensemble model specifically designed for ASSC. Our approach includes a crafted feature engineering block (FEB) that extracts 41 time and frequency domain features, out of which 23 are selected based on their high mutual information score (> 0.23). Uniquely, SleepBoost integrates three fundamental linear models into a cohesive multi-level tree structure, further enhanced by a novel reward-based adaptive weight allocation mechanism. Tested on the Sleep-EDF-20 dataset, SleepBoost demonstrates superior performance with an accuracy of 86.3%, F1-score of 80.9%, and Cohen kappa score of 0.807, outperforming leading DL models in ASSC. An ablation study underscores the critical role of our selective feature extraction in enhancing model accuracy and interpretability, crucial for clinical settings. This innovative approach not only offers a more transparent alternative to traditional DL models but also extends potential implications for monitoring and understanding sleep patterns in the context of neurodegenerative disorders. The open-source availability of SleepBoost's implementation at https://github.com/akibzaman/SleepBoost can further facilitate its accessibility and potential for widespread clinical adoption.

Abstract Image

SleepBoost:基于多级树的集合模型,用于自动睡眠阶段分类。
神经退行性疾病通常与睡眠中断有密切联系,这凸显了有效监测睡眠阶段的重要性。有鉴于此,自动睡眠阶段分类(ASSC)发挥着举足轻重的作用,由于深度学习(DL)的进步,该技术现在比以往任何时候都更加简化。然而,由于医疗从业人员的信任问题,深度学习模型的不透明性可能成为其临床应用的障碍。为了弥合这一差距,我们推出了 SleepBoost,这是一种专为 ASSC 设计的基于树的透明多层次集合模型。我们的方法包括一个精心制作的特征工程模块(FEB),可提取 41 个时域和频域特征,其中 23 个是根据其较高的互信息得分(> 0.23)选出的。与众不同的是,SleepBoost 将三个基本线性模型整合到一个具有凝聚力的多层次树形结构中,并通过新颖的基于奖励的自适应权重分配机制进一步增强。通过对 Sleep-EDF-20 数据集的测试,SleepBoost 表现出卓越的性能,准确率达到 86.3%,F1 分数达到 80.9%,Cohen kappa 分数达到 0.807,超过了 ASSC 中领先的 DL 模型。一项消融研究强调了我们的选择性特征提取在提高模型准确性和可解释性方面的关键作用,这对临床设置至关重要。这种创新方法不仅为传统的 DL 模型提供了一种更透明的替代方案,还为监测和了解神经退行性疾病的睡眠模式提供了潜在的意义。SleepBoost 的开源实现 https://github.com/akibzaman/SleepBoost 可以进一步促进其在临床上的广泛应用。
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来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
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