Random forests for survival data: which methods work best and under what conditions?

IF 1 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Matthew Berkowitz, Rachel MacKay Altman, Thomas M. Loughin
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引用次数: 0

Abstract

Few systematic comparisons of methods for constructing survival trees and forests exist in the literature. Importantly, when the goal is to predict a survival time or estimate a survival function, the optimal choice of method is unclear. We use an extensive simulation study to systematically investigate various factors that influence survival forest performance – forest construction method, censoring, sample size, distribution of the response, structure of the linear predictor, and presence of correlated or noisy covariates. In particular, we study 11 methods that have recently been proposed in the literature and identify 6 top performers. We find that all the factors that we investigate have significant impact on the methods’ relative accuracy of point predictions of survival times and survival function estimates. We use our results to make recommendations for which methods to use in a given context and offer explanations for the observed differences in relative performance.
生存数据的随机森林:哪些方法在哪些条件下最有效?
文献中很少对构建生存树和生存林的方法进行系统比较。重要的是,当目标是预测生存时间或估计生存函数时,最佳方法的选择并不明确。我们利用广泛的模拟研究,系统地调查了影响生存森林性能的各种因素--森林构建方法、删减、样本大小、响应的分布、线性预测因子的结构以及相关或噪声协变量的存在。我们特别研究了最近在文献中提出的 11 种方法,并确定了 6 种表现最佳的方法。我们发现,我们研究的所有因素都对这些方法的生存时间点预测和生存函数估计的相对准确性有重大影响。我们利用研究结果为在特定情况下使用哪种方法提出了建议,并为观察到的相对性能差异提供了解释。
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来源期刊
International Journal of Biostatistics
International Journal of Biostatistics MATHEMATICAL & COMPUTATIONAL BIOLOGY-STATISTICS & PROBABILITY
CiteScore
2.10
自引率
8.30%
发文量
28
审稿时长
>12 weeks
期刊介绍: The International Journal of Biostatistics (IJB) seeks to publish new biostatistical models and methods, new statistical theory, as well as original applications of statistical methods, for important practical problems arising from the biological, medical, public health, and agricultural sciences with an emphasis on semiparametric methods. Given many alternatives to publish exist within biostatistics, IJB offers a place to publish for research in biostatistics focusing on modern methods, often based on machine-learning and other data-adaptive methodologies, as well as providing a unique reading experience that compels the author to be explicit about the statistical inference problem addressed by the paper. IJB is intended that the journal cover the entire range of biostatistics, from theoretical advances to relevant and sensible translations of a practical problem into a statistical framework. Electronic publication also allows for data and software code to be appended, and opens the door for reproducible research allowing readers to easily replicate analyses described in a paper. Both original research and review articles will be warmly received, as will articles applying sound statistical methods to practical problems.
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