Inferring the allometric growth coefficient of juvenile African mud catfish, Clarias gariepinus (Burchell, 1822), using Bayesian and Frequentist regression models
{"title":"Inferring the allometric growth coefficient of juvenile African mud catfish, Clarias gariepinus (Burchell, 1822), using Bayesian and Frequentist regression models","authors":"F. V. Oluwale","doi":"10.4314/tzool.v23i1.1","DOIUrl":null,"url":null,"abstract":"Statistics is essential in biological and ecological scientific research. However, the default Frequentist statistics based on p-value and null hypothesis testing is often misused and misinterpreted, hence causing reproducible crises. The p-value concept deserved further examination because it has been irretrievably lost. Therefore, there is dire need for reform in the default Frequentist statistics as practiced by researchers because of the perils of p-values. Bayesian statistics, using the tools of Bayes Factors and posterior distributions derived from priors and likelihood function; rooted in Bayes’ Theorem is one of the suggested alternatives. Frequentist (least square) and Bayesian (specifying uniform Jeffreys-Zellner-Siow prior, r-scale =0.35) regression models, a standard statistical protocol in fisheries were applied to determine the allometric growth coefficient based on length (mm) and weight (g) measurements of juvenile African mud catfish, Clarias gariepinus from Epe Lagoon. The growth coefficient, b=3.20, 95% Confidence Interval [3.07, 3.34], t(96)=47.55, p<0.001 was significant with 96% explanatory power (R2=0.96).While Bayesian method, with 96% explanatory power (R2=0.96), also estimated, b=3.20, (with Credible Interval between 3.06 and 3.32). The Bayes Factor (>100) suggested the data is more plausible under the alternative model than the null model, but p-value cannot quantify evidence in support of alternative hypothesis, since p-value can only reject or fail to reject a null hypothesis. These findings suggested that juvenile C. gariepinus thrived in Epe Lagoon. Therefore, Bayesian inference is a robust substitute for Frequentist regression model in fisheries.","PeriodicalId":426223,"journal":{"name":"Zoologist (The)","volume":"49 10","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Zoologist (The)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4314/tzool.v23i1.1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Statistics is essential in biological and ecological scientific research. However, the default Frequentist statistics based on p-value and null hypothesis testing is often misused and misinterpreted, hence causing reproducible crises. The p-value concept deserved further examination because it has been irretrievably lost. Therefore, there is dire need for reform in the default Frequentist statistics as practiced by researchers because of the perils of p-values. Bayesian statistics, using the tools of Bayes Factors and posterior distributions derived from priors and likelihood function; rooted in Bayes’ Theorem is one of the suggested alternatives. Frequentist (least square) and Bayesian (specifying uniform Jeffreys-Zellner-Siow prior, r-scale =0.35) regression models, a standard statistical protocol in fisheries were applied to determine the allometric growth coefficient based on length (mm) and weight (g) measurements of juvenile African mud catfish, Clarias gariepinus from Epe Lagoon. The growth coefficient, b=3.20, 95% Confidence Interval [3.07, 3.34], t(96)=47.55, p<0.001 was significant with 96% explanatory power (R2=0.96).While Bayesian method, with 96% explanatory power (R2=0.96), also estimated, b=3.20, (with Credible Interval between 3.06 and 3.32). The Bayes Factor (>100) suggested the data is more plausible under the alternative model than the null model, but p-value cannot quantify evidence in support of alternative hypothesis, since p-value can only reject or fail to reject a null hypothesis. These findings suggested that juvenile C. gariepinus thrived in Epe Lagoon. Therefore, Bayesian inference is a robust substitute for Frequentist regression model in fisheries.
统计学在生物和生态科学研究中至关重要。然而,基于 p 值和零假设检验的默认频数统计常常被误用和曲解,从而造成可重现的危机。p 值概念值得进一步研究,因为它已经无可挽回地消失了。因此,由于 p 值的危害,研究人员迫切需要改革默认的频数统计。贝叶斯统计法,使用贝叶斯因子工具以及从先验和似然函数推导出的后验分布;植根于贝叶斯定理,是建议的替代方法之一。根据埃佩泻湖中非洲泥鲶幼鱼的长度(毫米)和重量(克)测量值,应用渔业标准统计规程--频数(最小平方)和贝叶斯(指定统一的 Jeffreys-Zellner-Siow 先验,r-尺度 =0.35)回归模型确定异速生长系数。生长系数(b=3.20,95% 置信区间 [3.07,3.34],t(96)=47.55,p100)表明,在替代模型下的数据比无效模型下的数据更可信,但 p 值不能量化支持替代假设的证据,因为 p 值只能拒绝或不能拒绝无效假设。这些研究结果表明,幼鱼在埃佩泻湖中茁壮成长。因此,在渔业领域,贝叶斯推断法是频数回归模型的可靠替代方法。