Improving the Synthesis Efficiency of Amino Acids by Analyzing the Key Sites of Intracellular Self-Assembly of Artificial Cellulosome

Nan Li, Lu Yang, Xiankun Ren, Peng Du, Piwu Li, Jing Su, Jing Xiao, Junqing Wang, Ruiming Wang
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Abstract

To explore the key sites affecting the intracellular assembly of key components of cellulosomes and obtain DocA mutants independent of Ca2+, Swiss-model, GROMACS, PyMOL, and other molecular dynamics simulation software were used for modeling and static and dynamic combination analysis. Site-specific mutation technology was used to mutate DocA, and Biacore was used to test the dependence of Ca2+ on the binding ability of protein DocA mutants and protein Coh, and to analyze the interaction and binding effect of mutant proteins in vitro. Forward intracellular mutant screening was performed based on semi-rational design and high throughput screening techniques. The orientation of mutations suitable for intracellular assembly was determined, and three directional mutant proteins, DocA-S1, DocA-S2, and DocA-S3, were obtained. Ca2+ independent DocA mutants were obtained gradually and their potential interaction mechanisms were analyzed. In the present study, intracellular self-assembly of key components of cellulosomes independent of Ca2+ was achieved, and DocA-S3 was applied to the assembly of key enzymes of L-lysine biosynthesis, in which DapA and DapB intracellular assembly increased L-lysine accumulation by 29.8% when compared with the control strains, providing a new strategy for improving the intracellular self-assembly of cellulosomes and amino acid fermentation efficiency.
通过分析人工纤维素体胞内自组装的关键位点提高氨基酸的合成效率
为探索影响纤维素体关键组分胞内组装的关键位点,获得独立于Ca2+的DocA突变体,采用Swiss-model、GROMACS、PyMOL等分子动力学模拟软件进行建模和静态、动态组合分析。利用位点特异性突变技术对DocA进行突变,并利用Biacore检测Ca2+对蛋白DocA突变体与蛋白Coh结合能力的依赖性,分析突变体蛋白在体外的相互作用和结合效果。基于半合理设计和高通量筛选技术进行了前向细胞内突变体筛选。确定了适合胞内组装的突变方向,得到了三种定向突变蛋白,即 DocA-S1、DocA-S2 和 DocA-S3。逐渐获得了独立于 Ca2+ 的 DocA 突变体,并分析了它们潜在的相互作用机制。本研究实现了纤维素体关键组分独立于Ca2+的胞内自组装,并将DocA-S3应用于L-赖氨酸生物合成关键酶的组装,其中DapA和DapB胞内组装与对照菌株相比,L-赖氨酸积累增加了29.8%,为提高纤维素体胞内自组装和氨基酸发酵效率提供了新策略。
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