The role of networks to overcome large-scale challenges in tomography: The non-clinical tomography users research network

Paul M. Gignac , Valeria Aceves , Stephanie Baker , Jessica J. Barnes , Joshua Bell , Doug Boyer , Deborah Cunningham , Francesco De Carlo , Morgan H. Chase , Karly E. Cohen , Matthew Colbert , Theresa De Cree , Juan Daza , Edwin Dickinson , Valerie DeLeon , Lindsay Dougan , Franklin Duffy , ChristiAna Dunham , Catherine M. Early , Dave R. Edey , Christopher M. Zobek
{"title":"The role of networks to overcome large-scale challenges in tomography: The non-clinical tomography users research network","authors":"Paul M. Gignac ,&nbsp;Valeria Aceves ,&nbsp;Stephanie Baker ,&nbsp;Jessica J. Barnes ,&nbsp;Joshua Bell ,&nbsp;Doug Boyer ,&nbsp;Deborah Cunningham ,&nbsp;Francesco De Carlo ,&nbsp;Morgan H. Chase ,&nbsp;Karly E. Cohen ,&nbsp;Matthew Colbert ,&nbsp;Theresa De Cree ,&nbsp;Juan Daza ,&nbsp;Edwin Dickinson ,&nbsp;Valerie DeLeon ,&nbsp;Lindsay Dougan ,&nbsp;Franklin Duffy ,&nbsp;ChristiAna Dunham ,&nbsp;Catherine M. Early ,&nbsp;Dave R. Edey ,&nbsp;Christopher M. Zobek","doi":"10.1016/j.tmater.2024.100031","DOIUrl":null,"url":null,"abstract":"<div><p>Our ability to visualize and quantify the internal structures of objects via computed tomography (CT) has fundamentally transformed science. As tomographic tools have become more broadly accessible, researchers across diverse disciplines have embraced the ability to investigate the 3D structure-function relationships of an enormous array of items. Whether studying organismal biology, animal models for human health, iterative manufacturing techniques, experimental medical devices, engineering structures, geological and planetary samples, prehistoric artifacts, or fossilized organisms, computed tomography has led to extensive methodological and basic sciences advances and is now a core element in science, technology, engineering, and mathematics (STEM) research and outreach toolkits. Tomorrow's scientific progress is built upon today's innovations. In our data-rich world, this requires access not only to publications but also to supporting data. Reliance on proprietary technologies, combined with the varied objectives of diverse research groups, has resulted in a fragmented tomography-imaging landscape, one that is functional at the individual lab level yet lacks the standardization needed to support efficient and equitable exchange and reuse of data. Developing standards and pipelines for the creation of new and future data, which can also be applied to existing datasets is a challenge that becomes increasingly difficult as the amount and diversity of legacy data grows. Global networks of CT users have proved an effective approach to addressing this kind of multifaceted challenge across a range of fields. Here we describe ongoing efforts to address barriers to recently proposed FAIR (Findability, Accessibility, Interoperability, Reuse) and open science principles by assembling interested parties from research and education communities, industry, publishers, and data repositories to approach these issues jointly in a focused, efficient, and practical way. By outlining the benefits of networks, generally, and drawing on examples from efforts by the Non-Clinical Tomography Users Research Network (NoCTURN), specifically, we illustrate how standardization of data and metadata for reuse can foster interdisciplinary collaborations and create new opportunities for future-looking, large-scale data initiatives.</p></div>","PeriodicalId":101254,"journal":{"name":"Tomography of Materials and Structures","volume":"5 ","pages":"Article 100031"},"PeriodicalIF":0.0000,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2949673X24000081/pdfft?md5=c2f896ba5b3416d400569fbf4fea0392&pid=1-s2.0-S2949673X24000081-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Tomography of Materials and Structures","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2949673X24000081","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Our ability to visualize and quantify the internal structures of objects via computed tomography (CT) has fundamentally transformed science. As tomographic tools have become more broadly accessible, researchers across diverse disciplines have embraced the ability to investigate the 3D structure-function relationships of an enormous array of items. Whether studying organismal biology, animal models for human health, iterative manufacturing techniques, experimental medical devices, engineering structures, geological and planetary samples, prehistoric artifacts, or fossilized organisms, computed tomography has led to extensive methodological and basic sciences advances and is now a core element in science, technology, engineering, and mathematics (STEM) research and outreach toolkits. Tomorrow's scientific progress is built upon today's innovations. In our data-rich world, this requires access not only to publications but also to supporting data. Reliance on proprietary technologies, combined with the varied objectives of diverse research groups, has resulted in a fragmented tomography-imaging landscape, one that is functional at the individual lab level yet lacks the standardization needed to support efficient and equitable exchange and reuse of data. Developing standards and pipelines for the creation of new and future data, which can also be applied to existing datasets is a challenge that becomes increasingly difficult as the amount and diversity of legacy data grows. Global networks of CT users have proved an effective approach to addressing this kind of multifaceted challenge across a range of fields. Here we describe ongoing efforts to address barriers to recently proposed FAIR (Findability, Accessibility, Interoperability, Reuse) and open science principles by assembling interested parties from research and education communities, industry, publishers, and data repositories to approach these issues jointly in a focused, efficient, and practical way. By outlining the benefits of networks, generally, and drawing on examples from efforts by the Non-Clinical Tomography Users Research Network (NoCTURN), specifically, we illustrate how standardization of data and metadata for reuse can foster interdisciplinary collaborations and create new opportunities for future-looking, large-scale data initiatives.

网络在克服断层摄影大规模挑战中的作用:非临床断层用户研究网络
我们通过计算机断层扫描(CT)对物体内部结构进行可视化和量化的能力从根本上改变了科学。随着断层扫描工具的普及,不同学科的研究人员已经能够研究大量物品的三维结构-功能关系。无论是研究生物体生物学、人类健康动物模型、迭代制造技术、实验性医疗设备、工程结构、地质和行星样本、史前文物还是生物化石,计算机断层扫描技术都带来了广泛的方法学和基础科学进步,现已成为科学、技术、工程和数学(STEM)研究和推广工具包的核心要素。明天的科学进步建立在今天的创新之上。在我们这个数据丰富的世界,这不仅需要获取出版物,还需要获取支持数据。对专有技术的依赖,再加上不同研究小组的目标各异,导致断层成像技术的格局支离破碎,虽然在单个实验室层面可以发挥作用,但却缺乏支持高效、公平地交换和重用数据所需的标准化。为创建新数据和未来数据制定标准和管道,并将其应用于现有数据集是一项挑战,随着遗留数据的数量和多样性不断增加,这项工作也变得越来越困难。全球计算机断层扫描用户网络已被证明是应对此类跨领域多方面挑战的有效方法。在此,我们介绍了为解决最近提出的 FAIR(可查找性、可访问性、互操作性、再利用)和开放科学原则所面临的障碍而正在进行的努力,方法是召集来自研究和教育界、工业界、出版商和数据存储库的有关各方,以集中、高效和实用的方式共同解决这些问题。通过概述网络的一般益处,并具体借鉴非临床断层用户研究网络(NoCTURN)的工作实例,我们说明了数据和元数据的标准化如何促进跨学科合作,并为面向未来的大规模数据计划创造新机遇。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信