Implementation of Hybrid Bat Algorithm-Ensemble on Human Oral Bioavailability Prediction of Drug Candidate

Muhamad Farhan Wirasantoso, Hasmawati, I. Kurniawan
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Abstract

One of significant parameters of Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) is Human Oral Bioavailability (HOB) which is crucial for determining the total of consumed drugs inside humans body circulation. Poor HOB results in undeterminable drug effects in the human body, with approximately 50% of drug candidates failing due to low oral availability. As many as 80% of drugs in the world use the oral route of entry into the body, so HOB prediction is very important to reduce side effects and the risk of toxicity brought by drugs. Unfortunately, oral bioavailability is currently predominantly measured in vivo consequently, developing in-silico methods is considered crucial. To reckon the human oral bioavailability of medication candidates, we used the Hybrid Bat Algorithm method for feature selection and the Ensemble method, i.e. Random Forest, AdaBoost, and XGBoost for the prediction model. The result showed that XGBoost as the best model in which the value of accuracy and Fl-score were 0.776, and 0.802, respectively.
混合蝙蝠算法-集合在候选药物人体口服生物利用度预测中的应用
吸收、分布、代谢、排泄和毒性(ADMET)的重要参数之一是人体口服生物利用度(HOB),它对于确定药物在人体循环中的总消耗量至关重要。人体口服生物利用度低会导致药物在人体内的作用无法确定,约有 50% 的候选药物因口服生物利用度低而失败。全球有多达 80% 的药物通过口服途径进入人体,因此预测口服生物利用度对于减少药物副作用和毒性风险非常重要。遗憾的是,目前口服生物利用度的测量主要是在体内进行的,因此开发体内方法至关重要。为了计算候选药物的人体口服生物利用度,我们使用混合蝙蝠算法(Hybrid Bat Algorithm)方法进行特征选择,并使用随机森林(Random Forest)、AdaBoost 和 XGBoost 等集合方法建立预测模型。结果表明,XGBoost 是最佳模型,其准确率和 Fl-score 值分别为 0.776 和 0.802。
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