Application of the AlphaFold2 Protein Prediction Algorithm Based on Artificial Intelligence

Quan Zhang, Beichang Liu, Guoqing Cai, Jili Qian, Zhengyu Jin
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引用次数: 6

Abstract

As the expression products of genes and macromolecules in living organisms, proteins are the main material basis of life activities. They exist widely in various cells and have various functions such as catalysis, cell signaling and structural support, playing a key role in life activities and functional execution. At the same time, the study of protein can better grasp the life activities from the molecular level, and has important practical significance for disease management, new drug development and crop improvement. Due to advances in high-throughput sequencing technology, protein sequence data has grown exponentially. The protein function prediction problem can be seen as a multi-label binary classification problem by extracting the features of a given protein and mapping them to the protein function label space. A variety of data sources can be mined to obtain protein function prediction features, such as protein sequence, protein structure, protein family, protein interaction network, etc. The initial steps are classical sequence-based methods, such as BLAST, which calculate the similarity between protein sequences and transmit annotations between proteins whose similarity scores exceed a specific threshold. This method has great limitations for protein function prediction without sequence similarity. Therefore, this paper analyzes the development prospect of bioanalysis and artificial intelligence through the application status and realization path of AlphaFold2 protein prediction algorithm based on artificial intelligence.
基于人工智能的 AlphaFold2 蛋白预测算法的应用
蛋白质作为生物体内基因和大分子的表达产物,是生命活动的主要物质基础。它们广泛存在于各种细胞中,具有催化、细胞信号转导和结构支持等多种功能,在生命活动和功能执行中起着关键作用。同时,对蛋白质的研究能更好地从分子水平把握生命活动,对疾病管理、新药研发和作物改良具有重要的现实意义。随着高通量测序技术的发展,蛋白质序列数据呈指数级增长。通过提取给定蛋白质的特征并将其映射到蛋白质功能标签空间,蛋白质功能预测问题可视为一个多标签二元分类问题。要获得蛋白质功能预测特征,可以挖掘多种数据源,如蛋白质序列、蛋白质结构、蛋白质家族、蛋白质相互作用网络等。最初的步骤是基于序列的经典方法,如 BLAST,该方法计算蛋白质序列之间的相似性,并在相似性得分超过特定阈值的蛋白质之间传递注释。这种方法对于没有序列相似性的蛋白质功能预测有很大的局限性。因此,本文通过基于人工智能的 AlphaFold2 蛋白质预测算法的应用现状和实现路径,分析了生物分析和人工智能的发展前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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