Comparison of dental topography of marmosets and tamarins (Callitrichidae) to other platyrrhine primates using a novel freeware pipeline

IF 1.6 3区 生物学 Q2 ZOOLOGY
Dorien de Vries, Mareike C. Janiak, Romina Batista, Jean P. Boubli, Ian B. Goodhead, Emma Ridgway, Doug M. Boyer, Elizabeth St. Clair, Robin M. D. Beck
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Abstract

Dental topographic metrics (DTMs), which quantify different aspects of the shape of teeth, are powerful tools for studying dietary adaptation and evolution in mammals. Current DTM protocols usually rely on proprietary software, which may be unavailable to researchers for reasons of cost. We address this issue in the context of a DTM analysis of the primate clade Platyrrhini (“New World monkeys”) by: 1) presenting a large comparative sample of scanned second lower molars (m2s) of callitrichids (marmosets and tamarins), previously underrepresented in publicly available datasets; and 2) giving full details of an entirely freeware pipeline for DTM analysis and its validation. We also present an updated dietary classification scheme for extant platyrrhines, based on cluster analysis of dietary data extracted from 98 primary studies. Our freeware pipeline performs equally well in dietary classification accuracy of an existing sample of platyrrhine m2s (excluding callitrichids) as a published protocol that uses proprietary software when multiple DTMs are combined. Individual DTMs, however, sometimes showed very different results in classification accuracies between protocols, most likely due to differences in smoothing functions. The addition of callitrichids resulted in high classification accuracy in predicting diet with combined DTMs, although accuracy was considerably higher when molar size was included (90%) than excluded (73%). We conclude that our new freeware DTM pipeline is capable of accurately predicting diet in platyrrhines based on tooth shape and size, and so is suitable for inferring probable diet of taxa for which direct dietary information is unavailable, such as fossil species.

Abstract Image

使用新型免费软件管道比较狨猴和犭胥(胼胝科)与其他板齿灵长类动物的牙齿地形图
牙齿地形度量(DTM)可以量化牙齿形状的不同方面,是研究哺乳动物饮食适应和进化的有力工具。目前的 DTM 方案通常依赖于专有软件,而研究人员可能由于成本原因无法使用这些软件。我们在对灵长类 Platyrrhini 支系("新世界猴")进行 DTM 分析时通过以下方法解决了这一问题:1)提供了大量扫描的胼胝目(狨和犭胥)第二下臼齿(m2s)比较样本,这些样本在以前的公开数据集中代表性不足;2)提供了完全免费的 DTM 分析管道及其验证的全部细节。我们还根据从 98 项主要研究中提取的膳食数据进行聚类分析,提出了现生板齿类动物的最新膳食分类方案。当多个 DTMs 组合在一起时,我们的免费软件管道对现存板翅类 m2s(不包括胼胝体)样本的膳食分类准确性与已发表的使用专利软件的方案相当。但是,有时单个 DTMs 的分类准确率在不同方案之间显示出非常不同的结果,这很可能是由于平滑函数的差异造成的。加入胼胝体后,使用组合 DTM 预测饮食的分类准确率很高,但加入臼齿大小时的准确率(90%)远高于排除臼齿大小时的准确率(73%)。我们的结论是,我们新的免费 DTM 管道能够根据牙齿形状和大小准确预测板齿类的食性,因此适用于推断化石物种等无法获得直接食性信息的类群的可能食性。
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来源期刊
CiteScore
4.30
自引率
10.50%
发文量
45
审稿时长
>12 weeks
期刊介绍: Journal of Mammalian Evolution is a multidisciplinary forum devoted to studies on the comparative morphology, molecular biology, paleobiology, genetics, developmental and reproductive biology, biogeography, systematics, ethology and ecology, and population dynamics of mammals and the ways that these diverse data can be analyzed for the reconstruction of mammalian evolution. The journal publishes high-quality peer-reviewed original articles and reviews derived from both laboratory and field studies. The journal serves as an international forum to facilitate communication among researchers in the multiple fields that contribute to our understanding of mammalian evolutionary biology.
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