Gerard J. Kleywegt , Paul D. Adams , Sarah J. Butcher , Catherine L. Lawson , Alexis Rohou , Peter B. Rosenthal , Sriram Subramaniam , Maya Topf , Sanja Abbott , Philip R. Baldwin , John M. Berrisford , Gérard Bricogne , Preeti Choudhary , Tristan I. Croll , Radostin Danev , Sai J. Ganesan , Timothy Grant , Aleksandras Gutmanas , Richard Henderson , J. Bernard Heymann , S. Raunser (Editor)
{"title":"Community recommendations on cryoEM data archiving and validation","authors":"Gerard J. Kleywegt , Paul D. Adams , Sarah J. Butcher , Catherine L. Lawson , Alexis Rohou , Peter B. Rosenthal , Sriram Subramaniam , Maya Topf , Sanja Abbott , Philip R. Baldwin , John M. Berrisford , Gérard Bricogne , Preeti Choudhary , Tristan I. Croll , Radostin Danev , Sai J. Ganesan , Timothy Grant , Aleksandras Gutmanas , Richard Henderson , J. Bernard Heymann , S. Raunser (Editor)","doi":"10.1107/S2052252524001246","DOIUrl":null,"url":null,"abstract":"<div><p>This white paper describes recommendations to the wwPDB, EMDB and the cryoEM communities regarding archiving and validation of single-particle structures and volumes.</p></div><div><p>In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop’s motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.</p></div>","PeriodicalId":14775,"journal":{"name":"IUCrJ","volume":"11 2","pages":"Pages 140-151"},"PeriodicalIF":2.9000,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10916293/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IUCrJ","FirstCategoryId":"88","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2052252524000204","RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
This white paper describes recommendations to the wwPDB, EMDB and the cryoEM communities regarding archiving and validation of single-particle structures and volumes.
In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop’s motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.
期刊介绍：
IUCrJ is a new fully open-access peer-reviewed journal from the International Union of Crystallography (IUCr).
The journal will publish high-profile articles on all aspects of the sciences and technologies supported by the IUCr via its commissions, including emerging fields where structural results underpin the science reported in the article. Our aim is to make IUCrJ the natural home for high-quality structural science results. Chemists, biologists, physicists and material scientists will be actively encouraged to report their structural studies in IUCrJ.
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