Diversity and antigenic potentials of Mycoplasmopsis bovis secreted and outer membrane proteins within a core genome of strains isolated from North American bison and cattle.

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Genome Pub Date : 2024-06-01 Epub Date: 2024-02-08 DOI:10.1139/gen-2023-0084
Emily L Wynn, A Springer Browne, Michael L Clawson
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引用次数: 0

Abstract

Mycoplasmopsis bovis is a worldwide economically important pathogen of cattle that can cause or indirectly contribute to bovine respiratory disease. M. bovis is also a primary etiological agent of respiratory disease in bison with high mortality rates. A major challenge in the development of an efficacious M. bovis vaccine is the design of antigens that contain both MHC-1 and MHC-2 T-cell epitopes, and that account for population level diversity within the species. Publicly available genomes and sequence read archive libraries of 381 M. bovis strains isolated from cattle (n = 202) and bison (n = 179) in North America were used to identify a core genome of 575 genes, including 38 that encode either known or predicted secreted or outer membrane proteins. The antigenic potentials of the proteins were characterized by the presence and strength of their T-cell epitopes, and their protein variant diversity at the population-level. The proteins had surprisingly low diversity and varying predictive levels of T-cell antigenicity. These results provide a reference for the selection or design of antigens for vaccine testing against strains infecting North American cattle and bison.

从北美野牛和牛身上分离出的菌株的核心基因组内牛支原体分泌蛋白和外膜蛋白的多样性和抗原潜能。
牛支原体是一种具有全球重要经济价值的牛病原体,可引起或间接引起牛呼吸道疾病。牛支原体也是野牛呼吸道疾病的主要病原体,死亡率很高。开发有效的牛海绵状芽孢杆菌疫苗的一大挑战是设计同时包含 MHC-1 和 MHC-2 T 细胞表位的抗原,并考虑到该物种内种群水平的多样性。我们利用从北美牛(202 头)和野牛(179 头)中分离出的 381 株牛海绵状芽孢杆菌的公开基因组和序列读取档案(SRA)文库,确定了包含 575 个基因的核心基因组,其中 38 个基因编码已知或预测的分泌蛋白或外膜蛋白。这些蛋白质的抗原潜能是通过其 T 细胞表位的存在和强度以及在群体水平上的蛋白质变异多样性来描述的。这些蛋白质的多样性出奇地低,T 细胞抗原性的预测水平也各不相同。这些结果为选择或设计针对北美牛和野牛感染菌株的疫苗测试抗原提供了参考。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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