Toward genome assemblies for all marine vertebrates: current landscape and challenges.

IF 11.8 2区 生物学 Q1 MULTIDISCIPLINARY SCIENCES
Emma de Jong, Lara Parata, Philipp E Bayer, Shannon Corrigan, Richard J Edwards
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引用次数: 0

Abstract

Marine vertebrate biodiversity is fundamental to ocean ecosystem health but is threatened by climate change, overharvesting, and habitat degradation. High-quality reference genomes are valuable foundational scientific resources that can inform conservation efforts. Consequently, global consortia are striving to produce reference genomes for representatives of all life. Here, we summarize the current landscape of available marine vertebrate reference genomes, including their phylogenetic diversity and geographic hotspots of production. We discuss key logistical and technical challenges that remain to be overcome if we are to realize the vision of a comprehensive reference genome library of all marine vertebrates.

实现所有海洋脊椎动物的基因组组装:现状与挑战。
海洋脊椎动物的生物多样性是海洋生态系统健康的基础,但却受到气候变化、过度捕捞和栖息地退化的威胁。高质量的参考基因组是宝贵的基础科学资源,可以为保护工作提供依据。因此,全球联盟正在努力为所有生命的代表制作参考基因组。在此,我们总结了目前可用的海洋脊椎动物参考基因组的情况,包括其系统发育多样性和生产的地理热点。我们讨论了要实现建立所有海洋脊椎动物综合参考基因组库的愿景,仍需克服的关键后勤和技术挑战。
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来源期刊
GigaScience
GigaScience MULTIDISCIPLINARY SCIENCES-
CiteScore
15.50
自引率
1.10%
发文量
119
审稿时长
1 weeks
期刊介绍: GigaScience seeks to transform data dissemination and utilization in the life and biomedical sciences. As an online open-access open-data journal, it specializes in publishing "big-data" studies encompassing various fields. Its scope includes not only "omic" type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale shareable data.
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