Approximating Electrostatic Potential of Molecules with Point Charges Mimicking the Electron Pairs

IF 0.6 Q4 PHYSICS, MULTIDISCIPLINARY
T. Nikolaienko, L. A. Bulavin
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引用次数: 0

Abstract

The electrostatic component used in the traditional force fields significantly impacts their accuracy in modelling the noncovalent interactions peculiar to biomolecular systems, including hydrogen bonding. In this contribution, we present a physical model for approximating the electrostatic potential of a molecule (MEP) based on the first-principle decomposition of its charge density distribution into the localized components. In contrast to conventional schemes, which typically use atom-centered charges to approximate MEP, the proposed approach locates such charges in the positions selected so as to mimic the anisotropy of the electron density distributions related to the electron pairs of atoms or covalent bonds. This peculiarity leads to a more accurate representation of the overall electrostatic potential, as verified by applying the proposed model to approximate the electrostatic component of the intermolecular interaction energy in 145 noncovalently bound molecular complexes from GMTKN55 database. This benchmark showed the root-mean-square difference between the true and approximated values of the electrostatic component of 2.7 kcal/mol, which is 2.2 times lower as compared to the traditional RESP charges method used as a baseline.
用模仿电子对的点电荷逼近分子的静电势
传统力场中使用的静电成分极大地影响了它们模拟生物分子系统特有的非共价相互作用(包括氢键)的准确性。在本文中,我们提出了一种物理模型,用于根据分子电荷密度分布的第一原理分解为局部成分来近似计算分子的静电势(MEP)。与通常使用原子中心电荷来近似 MEP 的传统方案不同,本文提出的方法将这些电荷定位在所选位置,以模仿与原子电子对或共价键相关的电子密度分布的各向异性。通过应用所提出的模型对 GMTKN55 数据库中 145 个非共价结合分子复合物的分子间相互作用能中的静电分量进行近似计算,验证了这一特性,从而更准确地表示了整体静电势。该基准表明,静电分量的真实值与近似值之间的均方根差为 2.7 kcal/mol,比作为基准的传统 RESP 电荷法低 2.2 倍。
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来源期刊
Ukrainian Journal of Physics
Ukrainian Journal of Physics PHYSICS, MULTIDISCIPLINARY-
CiteScore
1.20
自引率
20.00%
发文量
244
期刊介绍: Ukrainian Journal of Physics is the general physics edition of the Department of Physics and Astronomy of the National Academy of Sciences of Ukraine. The journal publishes original papers and reviews in the fields of experimental and theoretical physics.
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