Drain biofilm microbiota inside a cheese processing facility: Comparison of Listeria positive and Listeria negative drains

Miriam Vesela
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Abstract

Listeria monocytogenes was identified as one of the most dangerous food-borne pathogens of the 21st century, not only due to its high mortality rate but also because of its ability to establish itself as a part of drain biofilms and persist there over long periods of time. The insides of twelve drains in a cheese processing facility were swabbed over a period of five months. Bacterial DNA was isolated and quantified to ascertain the presence and abundance of the biofilm. Presence of Listeria spp. prs gene was found in four of the twelve drains, with one drain testing positive for the prs gene presence on three different occasions. 16S rRNA amplicon sequencing was conducted on the isolated DNA from two Listeria positive and two Listeria negative drains. The microbial community composition was evaluated. Most notably genera Streptococci and unclassified Lactobacillales were significantly different in abundance in the Listeria negative drains. Genera Flavobacterium and unclassified Xanthomonadaceae were found to be significantly more different in abundance in the LisTeria positive drains. The latter two genera were not previously associated with Listeria spp. or reported to be widespread in food processing environments (FPE), however, they help to illustrate the higher diversity that was seen in Listeria positive drains. This study suggests that even though the alpha diversity is not sigN ificantly different, there are differences between the drain biofilm composition between Listeria positive and Listeria negative drains, which can be further researched to ascertain how these organisms affect the presence of Listeria spp. inside drain biofilms.
奶酪加工厂内的排水沟生物膜微生物群:李斯特菌阳性排水沟与李斯特菌阴性排水沟的比较
单核细胞增生李斯特菌被确定为 21 世纪最危险的食源性病原体之一,这不仅是因为它的死亡率很高,还因为它能够在下水道生物膜中形成自己的一部分并长期存在。在五个月的时间里,我们对一家奶酪加工厂的十二个下水道内部进行了抽样检查。对细菌 DNA 进行了分离和量化,以确定生物膜的存在和数量。在 12 个下水道中的 4 个发现了李斯特菌属 prs 基因,其中一个下水道的 prs 基因在 3 个不同场合的检测中均呈阳性。对从两个李斯特菌阳性和两个李斯特菌阴性排水沟中分离出的 DNA 进行了 16S rRNA 扩增片段测序。对微生物群落组成进行了评估。最明显的是链球菌属和未分类的乳酸杆菌属在李斯特菌阴性排水沟中的丰度有显著差异。在李斯特菌阳性的排水沟中,黄杆菌属和未分类的黄单胞菌属在丰度上有显著差异。后两个属以前与李斯特菌属没有关联,也没有报道说它们广泛存在于食品加工环境(FPE)中,但它们有助于说明李斯特菌阳性排水沟中更高的多样性。这项研究表明,尽管α多样性没有显著差异,但李斯特菌阳性排水沟和李斯特菌阴性排水沟的排水沟生物膜组成存在差异,可以对此进行进一步研究,以确定这些生物如何影响排水沟生物膜中李斯特菌属的存在。
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