Time-reversal symmetry breaking in the chemosensory array: asymmetric switching and dissipation-enhanced sensing

David Hathcock, Qiwei Yu, Yuhai Tu
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Abstract

The Escherichia coli chemoreceptors form an extensive array that achieves cooperative and adaptive sensing of extracellular signals. The receptors control the activity of histidine kinase CheA, which drives a non-equilibrium phosphorylation-dephosphorylation reaction cycle for response regulator CheY. Recent single-cell FRET measurements revealed that kinase activity of the array spontaneously switches between active and inactive states, with asymmetric switching times that signify time-reversal symmetry breaking in the underlying dynamics. Here, we show that the asymmetric switching dynamics can be explained by a non-equilibrium lattice model, which considers both the dissipative reaction cycles of individual core units and the coupling between neighboring units. The model reveals that large dissipation and near-critical coupling are required to explain the observed switching dynamics. Microscopically, the switching time asymmetry originates from irreversible transition paths. The model shows that strong dissipation enables sensitive and rapid signaling response by relieving the speed-sensitivity trade-off, which can be tested by future single-cell experiments. Overall, our model provides a general framework for studying biological complexes composed of coupled subunits that are individually driven by dissipative cycles and the rich non-equilibrium physics within.
化学感知阵列中的时间逆对称破缺:非对称开关和耗散增强感应
大肠杆菌化学感受器形成了一个广泛的阵列,可实现对细胞外信号的合作性和适应性感应。最近的单细胞 FRET 测量发现,该阵列的激酶活性在活性和非活性状态之间自发切换,切换时间不对称,这意味着基本动力学中的时间反转对称性被打破。在这里,我们展示了非对称切换动力学可以用一个非平衡晶格模型来解释,该模型既考虑了单个核心单元的耗散反应周期,也考虑了相邻单元之间的耦合。该模型显示,要解释观察到的开关动态,需要大量耗散和接近临界的耦合。从微观上看,开关时间不对称源于不可逆的转换路径。该模型表明,强耗散可以缓解速度-敏感性权衡,从而实现灵敏而快速的信号响应,这可以通过未来的单细胞实验来检验。总之,我们的模型为研究由耦合亚单位组成的生物复合物提供了一个通用框架,这些亚单位由耗散循环和其中丰富的非平衡态物理单独驱动。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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